miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054364.1/3334-3416 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 125 bits (63), Expect = 1e-28
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 29 ggttcctgcagagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaac 88
|||||||| |||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct: 1 ggttcctgaagagatggtagactatggaacgtaggctttatgatttttgacctatgtaac 60
Query: 89 acggtccactaactctcagtatc 111
| |||||||||||||||||||||
Sbjct: 61 atggtccactaactctcagtatc 83
>RF00641;mir-154;AAIY01428934.1/1733-1815 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 109 bits (55), Expect = 9e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 29 ggttcctgcagagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaac 88
|||||||| ||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct: 1 ggttcctgaagagatggtagactatggaacgtaggcgttatgatttttgacctatgtaac 60
Query: 89 acggtccactaactctcag 107
| |||||||||||||||||
Sbjct: 61 atggtccactaactctcag 79
>RF00641;mir-154;AAYZ01424895.1/367-448 9978:Ochotona princeps
(American pika)
Length = 82
Score = 99.6 bits (50), Expect = 9e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 30 gttcctgcagagatggtagactatggaacgtaggctgtgtgatttctgacctatgtaaca 89
||||||| |||| |||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 1 gttcctgaagaggtggtagactatggaacgtaggcgttacgttttctgacctatgtaaca 60
Query: 90 cggtccactaactctcagtatc 111
|||||||||||||||||||||
Sbjct: 61 tggtccactaactctcagtatc 82
>RF00641;mir-154;ABRQ01054364.1/4611-4690 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 76 tgacctatgtaacacggtccactaactctcagtatc 111
|||| ||||||||||||||||||||| |||||||||
Sbjct: 45 tgacgtatgtaacacggtccactaaccctcagtatc 80
