miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054373.1/1454-1532 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 121 bits (61), Expect = 2e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 35 tacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggca 94
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3 tacttaaagtgaggttgccctttgtatattcggttttttgacatagaatatacaagggca 62
Query: 95 agctctctgtgagtatc 111
||||||||| |||||||
Sbjct: 63 agctctctgggagtatc 79
>RF00641;mir-154;ABRO01197048.1/1145-1223 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 79
Score = 101 bits (51), Expect = 2e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 33 ggtacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaaggg 92
||||||||||||||||||||||||||||||||||| || || || | |||||||||||
Sbjct: 1 ggtacttaaagcgaggttgccctttgtatattcggcttcttcacattggatatacaaggg 60
Query: 93 caagctctctgtgagtatc 111
|||||||||||||||||||
Sbjct: 61 caagctctctgtgagtatc 79
>RF00641;mir-154;AAIY01699599.1/3364-3441 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 78
Score = 101 bits (51), Expect = 2e-21
Identities = 73/79 (92%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 33 ggtacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaaggg 92
||||||||| ||||||||||| || ||||||||||||| |||||| |||||||||||||
Sbjct: 1 ggtacttaacgcgaggttgcc-ttggtatattcggtttattgacgtggaatatacaaggg 59
Query: 93 caagctctctgtgagtatc 111
|||||||||||||||||||
Sbjct: 60 caagctctctgtgagtatc 78
>RF00641;mir-154;AAGV020362614.1/822-900 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 79
Score = 91.7 bits (46), Expect = 2e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 42 agcgaggttgccctttgtatattcggttttttgacgcagaatatacaagggcaagctctc 101
||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct: 10 agcgaggttaccctttgtgtattcggtttattgacgtggaatatacaagggcaagctctc 69
Query: 102 tgtgag 107
||||||
Sbjct: 70 tgtgag 75
>RF00641;mir-154;AAGU02275630.1/1197-1275 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 77.8 bits (39), Expect = 3e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 33 ggtacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaaggg 92
|||||||| || |||||| || ||||||||||| |||| ||||| |||||||||||||
Sbjct: 1 ggtacttagagtgaggttaccatttgtatattcagtttcttgacatggaatatacaaggg 60
Query: 93 caagctctctgtgag 107
|||||||||||||||
Sbjct: 61 caagctctctgtgag 75
>RF00641;mir-154;AADB02234051.1/94-172 9606:Homo sapiens (human)
Length = 79
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 67 gttttttgacgcagaatatacaagggcaagctctctgtgagtatc 111
|||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 35 gtttattgacgtggaatatacaagggcaagctctctgtgagtatc 79
>RF00641;mir-154;AAYZ01254084.1/2089-2167 9978:Ochotona princeps
(American pika)
Length = 79
Score = 61.9 bits (31), Expect = 2e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 33 ggtacttaaagcgaggttgccctttgtatattcggttttttgacgcagaatatacaaggg 92
|||||| | |||||||||||||| ||||||||| || | ||||| | ||||||||||
Sbjct: 1 ggtactcagagcgaggttgccctgtgtatattccgtgtattgacctgcagtatacaaggg 60
Query: 93 caagctctctgtgag 107
|||||||||||||||
Sbjct: 61 caagctctctgtgag 75
