miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAKN02051949.1/133347-133425 10141:Cavia porcellus
(domestic guinea pig)
Length = 79
Score = 131 bits (66), Expect = 2e-30
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 33 ggtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacag 92
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacctgaagagaggttgtctgtgatgagttcgctttattaatgacgaatataacacag 60
Query: 93 atggcctgttttcagtac 110
||||||||| ||||||||
Sbjct: 61 atggcctgtcttcagtac 78
>RF00641;mir-154;AAQR01664935.1/16813-16890 30611:Otolemur garnettii
(small-eared galago)
Length = 78
Score = 125 bits (63), Expect = 1e-28
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 33 ggtacttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacag 92
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtatttgagaagaggttgtctgtgatgagttcgctttattaatgacgaatataacacag 60
Query: 93 atggcctgttt 103
|||||||||||
Sbjct: 61 atggcctgttt 71
>RF00641;mir-154;ABRQ01054379.1/507-585 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 125 bits (63), Expect = 1e-28
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 37 cttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatgg 96
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 cttgaggagaggctgtctgtgatgagttcgctttatcaatgacgaatataacacagatgg 64
Query: 97 cctgttttcagtacc 111
|||||| ||||||||
Sbjct: 65 cctgttctcagtacc 79
>RF00641;mir-154;AAYZ01254085.1/11201-11278 9978:Ochotona princeps
(American pika)
Length = 78
Score = 117 bits (59), Expect = 4e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 39 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 98
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 6 tgaggagaggttgtctgtgatgagttcgctgtattaatgtcgaatataacacagatggcc 65
Query: 99 tgttttc 105
|||||||
Sbjct: 66 tgttttc 72
>RF00641;mir-154;AAGW01274484.1/405-482 9986:Oryctolagus cuniculus
(rabbit)
Length = 78
Score = 105 bits (53), Expect = 1e-22
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 39 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 98
||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 6 tgaggggaggttgtctgtgatgagttcgctgtattaaagccgaatataacacagatggcc 65
Query: 99 tgttttcag 107
|||||||||
Sbjct: 66 tgttttcag 74
>RF00641;mir-154;AAGV020430602.1/10-84 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 75
Score = 85.7 bits (43), Expect = 1e-16
Identities = 57/59 (96%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 50 tgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgttttcagt 108
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 16 tgtctgtgatgagttcgctttatt-atgacgaatat-acacagatggcctgttttcagt 72
