miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAFC03086346.1/12077-12000 9913:Bos taurus
(cattle)
Length = 78
Score = 147 bits (74), Expect = 3e-35
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 12 tatgtggagagatggtcgaccataaaacgtacgtgtgctttatgacgtatgtaacatggt 71
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 tatgtggagagatggtcgaccataaaacgtacgtgtgctttatgacgtatgtcacatggt 60
Query: 72 ccactaattctcagcatc 89
||||||||||||||||||
Sbjct: 61 ccactaattctcagcatc 78
>RF00641;mir-154;AAEX02019639.1/132949-133026 9615:Canis lupus
familiaris (dog)
Length = 78
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 18 gagagatggtcgaccataaaacgtacgtgtgctttatgacgtatgtaacatggtccacta 77
|||||||||| ||||||||| ||||||||| |||| ||||||||| |||||||||||||
Sbjct: 7 gagagatggtagaccataaagcgtacgtgttgtttacgacgtatgtgacatggtccacta 66
Query: 78 attctcagcatc 89
||||||||||||
Sbjct: 67 attctcagcatc 78
>RF00641;mir-154;AAWR02020065.1/15896-15973 9796:Equus caballus
(horse)
Length = 78
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 18 gagagatggtcgaccataaaacgtacgtgtgctttatgacgtatgtaacatggtccacta 77
|||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct: 7 gagagatggtagaccataaagtgtacgtgttgtttatgacgtatgcaacatggtccacta 66
Query: 78 attctcagca 87
||||||||||
Sbjct: 67 attctcagca 76
>RF00641;mir-154;AAGV020362609.1/5811-5889 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 79
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 16 tggagagatggtcgaccataaaacgtacgtgtgctttatgacgtatgtaacatggtccac 75
|||||||||||| |||||| || ||| | || |||||||||||||||||||||||||||
Sbjct: 6 tggagagatggtagaccatcaagtgtatgcgtcctttatgacgtatgtaacatggtccac 65
Query: 76 taattctcagc 86
|||||||||||
Sbjct: 66 taattctcagc 76
>RF00641;mir-154;ABVD01172440.1/3116-3195 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 16 tggagagatggtcgaccataaaacgtacgtgtgctttatgacgtatgtaacatggtccac 75
|||||||||||| ||||||||| |||||| | |||| |||||||||||||||||| |
Sbjct: 7 tggagagatggtagaccataaagcgtacgcatcgtttacgacgtatgtaacatggtctgc 66
Query: 76 taattctcagcatc 89
|||||||| |||||
Sbjct: 67 taattctcggcatc 80
>RF00641;mir-154;AAPY01359972.1/2175-2254 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 16 tggagagatggtcgaccataaaacgtacgtgtgctttatgacgtatgtaacatggtccac 75
|||||||||||| | ||||||| | || |||| |||||||| |||| |||||||||||
Sbjct: 7 tggagagatggttggccataaagcatatgtgtcatttatgacaaatgtgacatggtccac 66
Query: 76 taattctcagcatc 89
|| |||||||||||
Sbjct: 67 tagttctcagcatc 80
>RF00641;mir-154;AAGU02503119.1/243-322 9785:Loxodonta africana
(African savanna elephant)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 16 tggagagatggtcgaccataaaacgtacgtgtgctttatgacgtatgtaacatggtccac 75
|||||||||||| |||||| || | ||| || ||| |||||| |||| ||||||||||
Sbjct: 7 tggagagatggtagaccattaagcctacacgttgtttctgacgtgtgtagcatggtccac 66
Query: 76 taattctcag 85
||||||||||
Sbjct: 67 taattctcag 76
>RF00641;mir-154;AAYZ01424895.1/367-448 9978:Ochotona princeps
(American pika)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaattctcag 85
|||| |||||||||||||||||||| ||||||
Sbjct: 47 tgacctatgtaacatggtccactaactctcag 78
>RF00641;mir-154;AAIY01428934.1/1733-1815 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaattctcag 85
|||| |||||||||||||||||||| ||||||
Sbjct: 48 tgacctatgtaacatggtccactaactctcag 79
>RF00641;mir-154;ABRQ01054364.1/3334-3416 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 54 tgacgtatgtaacatggtccactaattctcag 85
|||| |||||||||||||||||||| ||||||
Sbjct: 48 tgacctatgtaacatggtccactaactctcag 79
