miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00762;mir-412;AALT01091711.1/638-727 42254:Sorex araneus
(European shrew)
Length = 90
Score = 121 bits (61), Expect = 2e-27
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 30 ctggggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacc 89
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 ctggggtacaggatggatggtcgaccagttggaaagtaattgtgtcgaatgtacttcacc 60
Query: 90 tgggccactagctgtccgtacccac 114
||| |||||||| ||||| ||||||
Sbjct: 61 tggtccactagccgtccgcacccac 85
>RF00762;mir-412;CABD01018504.1/52208-52298 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 91
Score = 119 bits (60), Expect = 9e-27
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 44 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccactagctg 103
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 16 ggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctggtccactagccg 75
Query: 104 tccgtacccactgcag 119
|||||| || ||||||
Sbjct: 76 tccgtatccgctgcag 91
>RF00762;mir-412;ABDC01257675.1/5683-5773 30608:Microcebus murinus
(gray mouse lemur)
Length = 91
Score = 115 bits (58), Expect = 1e-25
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 40 ggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccacta 99
||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct: 12 ggacggatggtcgaccagttggaaagtaattgtccccaatgtacttcacctggtccacta 71
Query: 100 gctgtccgtacccactgc 117
|| |||||||||||||||
Sbjct: 72 gccgtccgtacccactgc 89
>RF00762;mir-412;AAKN02051949.1/132908-132997 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 113 bits (57), Expect = 6e-25
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 30 ctggggtacaggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacc 89
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ctggggtagcggacggatggtcgaccagttggaaagtaattgtctctaatgtacttcacc 60
Query: 90 tgggccactagctgtccgtacccac 114
||| |||||||| ||| || |||||
Sbjct: 61 tggtccactagccgtctgtgcccac 85
>RF00762;mir-412;ABRQ01054379.1/32-122 9813:Procavia capensis (cape
rock hyrax)
Length = 91
Score = 89.7 bits (45), Expect = 8e-18
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 39 aggacggatggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccact 98
|||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct: 12 aggatggatggtcgaccagt-ggaaagtaattgtttataatgtacttcacctggtccact 70
Query: 99 agctgtccgtacccactgcag 119
||| ||| | ||||||||||
Sbjct: 71 agccgtctgcgcccactgcag 91
>RF00762;mir-412;AAIY01437686.1/1059-969 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 91
Score = 81.8 bits (41), Expect = 2e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 47 tggtcgaccagttggaaagtaattgtttctaatgtacttcacctgggccactagctgtcc 106
|||||||||||||||||||||||| ||| ||||||| ||||||||| |||||||| ||
Sbjct: 19 tggtcgaccagttggaaagtaattttttataatgtatttcacctggtccactagccatca 78
Query: 107 gtacccactgcag 119
|| ||||||||||
Sbjct: 79 gtgcccactgcag 91
>RF00762;mir-412;AAEX02019639.1/169950-170039 9615:Canis lupus
familiaris (dog)
Length = 90
Score = 63.9 bits (32), Expect = 5e-10
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 30 ctggggtacaggacggatggtcgaccagttggaaagtaattgtt 73
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctggggtacaggacggatggtcgacca-atggaaagtaattgtt 43
