miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054376.1/2766-2844 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 157 bits (79), Expect = 4e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 16 ggtacttgaagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggc 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggc 60
Query: 76 tctcctctcttttagtgtc 94
|||||||||||||||||||
Sbjct: 61 tctcctctcttttagtgtc 79
>RF00641;mir-154;EU616812.1/2503-2581 10090:Mus musculus (house
mouse)
Length = 79
Score = 121 bits (61), Expect = 2e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 18 tacttgaagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctc 77
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 3 tacttggagagaggctggccgtgatgaattcgattcatctaaacgagtcatacacggctc 62
Query: 78 tcctctcttttagtgtc 94
||||||||| |||||||
Sbjct: 63 tcctctcttctagtgtc 79
>RF00641;mir-154;AADA01084967.1/16706-16786 9598:Pan troglodytes
(chimpanzee)
Length = 81
Score = 93.7 bits (47), Expect = 5e-19
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 16 ggtacttgaagagaggctggccgtgatgaattcgattcatcaaag-cgagtcatacacgg 74
|||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct: 1 ggtacttggagagaggctggccgtgatgaattcgattcgtcaaagtcgagtcatactcgg 60
Query: 75 ctctcct 81
|||||||
Sbjct: 61 ctctcct 67
>RF00641;mir-154;AAGW01206555.1/4060-4141 9986:Oryctolagus
cuniculus (rabbit)
Length = 82
Score = 89.7 bits (45), Expect = 7e-18
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 46 ttcgattcatcaaagcgagtcatacacggctctcctctcttttagtgtc 94
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 34 ttcgattcatcaaagcgagtcatacacggctctcctctcttctagtgtc 82
>RF00641;mir-154;AANN01387448.1/1462-1384 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 85.7 bits (43), Expect = 1e-16
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 25 agagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggctctcctctc 84
||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct: 10 agagaggacggccgtgatgaattcgatccctcaaagcgagtcatacgcggctctcctctc 69
Query: 85 ttt 87
|||
Sbjct: 70 ttt 72
>RF00641;mir-154;AAQQ01350203.1/713-790 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 78
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 35 gccgtgatgaattcgattcatcaaagcgagtcatacacggctctcctctcttttagtgtc 94
|||| |||||||||| |||||| ||| ||||| |||| | ||||||||||||||||||||
Sbjct: 19 gccgcgatgaattcggttcatccaagtgagtcctacatgactctcctctcttttagtgtc 78
>RF00641;mir-154;AAKN02051949.1/123833-123911 10141:Cavia
porcellus (domestic guinea pig)
Length = 79
Score = 61.9 bits (31), Expect = 2e-09
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 16 ggtacttgaagagaggctggccgtgatgaattcgattcatcaaagcgagtcatacacggc 75
|||||||| |||| ||||||| ||||| | || ||| |||||||| || |||||||||||
Sbjct: 1 ggtacttggagaggggctggctgtgatcagtttgatccatcaaagtgactcatacacggc 60
Query: 76 tctcctctcttttagtgtc 94
| |||||||| ||| ||||
Sbjct: 61 tgtcctctctgttactgtc 79
