miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054375.1/598-677 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 143 bits (72), Expect = 5e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggg 70
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ggtacttgaagagtggttatccctgctgtgttcgctttatttatgacgaatcatacaggg 60
Query: 71 acatccagtttttcagtatc 90
||||||||||||||||||||
Sbjct: 61 acatccagtttttcagtatc 80
>RF00641;mir-154;ABRQ01054373.1/1995-2074 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 11 ggtacttgaagagtggctatccctgctgtgttcgctgtatttatgacgaatcatacaggg 70
|||||||||||||||| |||||||| |||||| | || | ||| |||||| |||||||
Sbjct: 1 ggtacttgaagagtggttatccctgtcctgttcgttttactcatgtcgaatcgtacaggg 60
Query: 71 acatccagtttttcagtatc 90
|||||| ||||||||||||
Sbjct: 61 tcatccactttttcagtatc 80
>RF00641;mir-154;AAYZ01254085.1/3260-3339 9978:Ochotona princeps
(American pika)
Length = 80
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 atcatacagggacatccagtttttcag 86
|||||||||||||||||||||||||||
Sbjct: 50 atcatacagggacatccagtttttcag 76
