miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054368.1/310-390 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 137 bits (69), Expect = 3e-32
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||
Sbjct: 1 gatacttgaaggagaggttgtccgtgttgtcttctctttatttatgatgaaacatgcacg 60
Query: 68 ggaaacctcttttttagtatc 88
|||||||||||||||||||||
Sbjct: 61 ggaaacctcttttttagtatc 81
>RF00641;mir-154;AADB02234050.1/241-320 9606:Homo sapiens (human)
Length = 80
Score = 119 bits (60), Expect = 7e-27
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 17 aggagaggttatccgtgttgtattctctttatttatgatgaaacatacacgggaaacctc 76
|||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9 aggaaaggttgtccgtgttgtcttctctttatttatgatgaaacatacacgggaaacctc 68
Query: 77 ttttttagtatc 88
||||||||||||
Sbjct: 69 ttttttagtatc 80
>RF00641;mir-154;AAGW01441521.1/639-716 9986:Oryctolagus cuniculus
(rabbit)
Length = 78
Score = 56.0 bits (28), Expect = 9e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 8 gatacttgaaggagaggttatccgtgttgtattctctttatttatgatgaaacatacacg 67
||||||||| || |||| | || ||| ||| |||||||||||| |||||||||||||| |
Sbjct: 1 gatacttgacggggaggctgtctgtgctgtcttctctttatttttgatgaaacatacagg 60
Query: 68 ggaa 71
||||
Sbjct: 61 ggaa 64
>RF00641;mir-154;ABRQ01054377.1/1437-1516 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 22 aggttatccgtgttgtattctctttatttatgatgaaacatacacgg 68
||||||||||||||| ||| |||||||| ||| ||| |||||||||
Sbjct: 14 aggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 60
>RF00641;mir-154;AAWR02020065.1/25372-25448 9796:Equus caballus
(horse)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 20 agaggttatccgtgttgtattctctttatttatgatgaaacataca 65
|||||||||| ||||| | ||| ||||||||||||||||| |||||
Sbjct: 12 agaggttatctgtgtt-tcttcgctttatttatgatgaaaaataca 56
