miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAYZ01424897.1/1412-1491 9978:Ochotona princeps
(American pika)
Length = 80
Score = 99.6 bits (50), Expect = 9e-21
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 35 cctgagaagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgca 94
|||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct: 5 cctgagaagaagtcgcccatgttcttttcgctgaatatgtgccgaaacaaacatggtgca 64
Query: 95 cttctt 100
||||||
Sbjct: 65 cttctt 70
>RF00641;mir-154;ABRQ01054369.1/2520-2599 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 97.6 bits (49), Expect = 3e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 31 ggtacctgagaagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatgg 90
||||||||||| ||||| ||||||||||||||||||| || ||| ||||||||||||||
Sbjct: 1 ggtacctgagaggaagttgcccatgttcttttcgctttatacgtgacgaaacaaacatgg 60
Query: 91 tgcacttcttttt 103
|||||||||||||
Sbjct: 61 tgcacttcttttt 73
>RF00641;mir-154;AAIY01434920.1/105-183 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 36 ctgagaagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcac 95
|||| ||||||| ||||||||| ||||||||| || |||| |||||||||||||||||||
Sbjct: 5 ctgaaaagaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcac 64
Query: 96 ttctttttcggt 107
||||||||||||
Sbjct: 65 ttctttttcggt 76
>RF00641;mir-154;AAFC03086346.1/3792-3714 9913:Bos taurus (cattle)
Length = 79
Score = 83.8 bits (42), Expect = 5e-16
Identities = 58/62 (93%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 41 aagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttctt 100
||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 11 aagaagttgcccatgttcttttcgct-gatatgtgacgaaacaaacatggtgcacttctt 69
Query: 101 tt 102
||
Sbjct: 70 tt 71
>RF00641;mir-154;AACN010421419.1/1043-964 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 81.8 bits (41), Expect = 2e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 35 cctgagaagaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgca 94
|||| |||||||| |||| |||| |||||||||||| ||| ||||||||||||||||||
Sbjct: 5 cctgggaagaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgca 64
Query: 95 cttctttttcggt 107
||||||| |||||
Sbjct: 65 cttctttctcggt 77
>RF00641;mir-154;AAPY01359973.1/4034-4113 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 69.9 bits (35), Expect = 8e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 49 gcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttctttttcggt 107
|||| |||| ||||||||| || |||| |||||||||||||||||||||||||| ||||
Sbjct: 19 gcccgtgttattttcgctttatgtgtgacgaaacaaacatggtgcacttcttttccggt 77
