miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01206554.1/3410-3488 9986:Oryctolagus
cuniculus (rabbit)
Length = 79
Score = 113 bits (57), Expect = 5e-25
Identities = 73/77 (94%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 12 gatatttgaggagaggttatccgtgttatgttcgcttggctcatcatgaataatacatgg 71
||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1 gatatttgaggagaggttaaccgtgttatgttcgctt-gttcatcatgaataatacatgg 59
Query: 72 ttaacctctctttgaat 88
||||||||| |||||||
Sbjct: 60 ttaacctctttttgaat 76
>RF00641;mir-154;AAIY01688747.1/914-993 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 79.8 bits (40), Expect = 7e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 12 gatatttgaggagaggttatccgtgttatgttcgcttggctcatcatgaataatacatgg 71
||||||||||| ||||||||||||||| |||||| | || |||||||||||||||||
Sbjct: 1 gatatttgaggggaggttatccgtgttctgttcgtgtcattcgtcatgaataatacatgg 60
Query: 72 ttaacctctctttgaatatc 91
|||||||| ||||||||||
Sbjct: 61 ataacctctttttgaatatc 80
>RF00641;mir-154;ABRP01151524.1/5612-5691 132908:Pteropus vampyrus
(large flying fox)
Length = 80
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 14 tatttgaggagaggttatccgtgttatgttcgcttggctcatcatgaataatacatggtt 73
||||||||||||||||| || |||| || || || | ||||||||||||||||||||||
Sbjct: 3 tatttgaggagaggttagccatgttgtgctcactccgttcatcatgaataatacatggtt 62
Query: 74 aacctctctttgaatatc 91
||||||| || |||||||
Sbjct: 63 aacctcttttggaatatc 80
>RF00641;mir-154;AAGU02865591.1/857-936 9785:Loxodonta africana
(African savanna elephant)
Length = 80
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 12 gatatttgaggagaggttatccgtgttatgttcgcttggctcatcatgaataatacatgg 71
||||||| ||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||
Sbjct: 1 gatatttaaggagaggttatctgtgttctgttcacttcattcatcataaataatacatgg 60
Query: 72 ttaacctctctttgaatatc 91
|||||||| | ||||||||
Sbjct: 61 ataacctctttctgaatatc 80
>RF00641;mir-154;ABRQ01054374.1/1158-1237 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 12 gatatttgaggagaggttatccgtgttatgttcgcttggctcatcatgaataatacatgg 71
|||||||||||||||||||| | |||| |||| || | |||| ||||||||||||||
Sbjct: 1 gatatttgaggagaggttattcatgttctgtttgcgtctttcattgtgaataatacatgg 60
Query: 72 ttaacctctctttgaatatc 91
|||||||| ||||||||||
Sbjct: 61 ataacctctttttgaatatc 80
