miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AADC01118575.1/87087-87166 9606:Homo sapiens
(human)
Length = 80
Score = 127 bits (64), Expect = 3e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 12 ggtacttgaagagaggataccctttgtatgttcacttaattaatggcgaatatacagagg 71
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 1 ggtacttaaagagaggataccctttgtatgttcacttgattaatggcgaatatacagggg 60
Query: 72 gagactcttatttgcgtatc 91
|||||||| |||||||||||
Sbjct: 61 gagactctcatttgcgtatc 80
>RF00641;mir-154;AAPE01089254.1/570-648 59463:Myotis lucifugus
(little brown bat)
Length = 79
Score = 103 bits (52), Expect = 4e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 12 ggtacttgaagagaggataccctttgtatgttcacttaattaatggcgaatatacagagg 71
|||||||||| |||| ||||||||||||||||||||| |||||||| |||| ||||| ||
Sbjct: 1 ggtacttgaaaagagaataccctttgtatgttcactttattaatggtgaatgtacag-gg 59
Query: 72 gagactcttatttgcgtatc 91
||||||||||||||||||||
Sbjct: 60 gagactcttatttgcgtatc 79
>RF00641;mir-154;AAGU02890007.1/573-652 9785:Loxodonta africana
(African savanna elephant)
Length = 80
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 12 ggtacttgaagagaggataccctttgtatgttcacttaattaatggcgaatatacagagg 71
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| ||
Sbjct: 1 ggtacttgaagagaggataccctttgtatgttcactctattcatgatgaatatacagggg 60
Query: 72 gagactcttatttgcgtatc 91
|||||||||||||| |||||
Sbjct: 61 gagactcttatttgtgtatc 80
>RF00641;mir-154;AAGV020362613.1/432-509 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 78
Score = 63.9 bits (32), Expect = 4e-10
Identities = 70/80 (87%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 12 ggtacttgaagagaggataccctttgtatgttcacttaattaatggcgaatatacagagg 71
|||||||||||||||||||||| |||| |||||| |||||| | |||||||| | ||
Sbjct: 1 ggtacttgaagagaggataccccttgtgtgttcatgctattaat-gtgaatatac-gggg 58
Query: 72 gagactcttatttgcgtatc 91
||||||||||||||||||||
Sbjct: 59 gagactcttatttgcgtatc 78
>RF00641;mir-154;ABDC01257673.1/11708-11785 30608:Microcebus
murinus (gray mouse lemur)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 19 gaagagaggataccctttgtatgttcacttaattaatggcgaatatacagagggagactc 78
|||||||||| |||||||||||| || || |||||||||||||| |||| |||||||||
Sbjct: 8 gaagagaggacaccctttgtatgctctctctattaatggcgaatacacag-gggagactc 66
Query: 79 t 79
|
Sbjct: 67 t 67
