miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01360474.1/6624-6703 9986:Oryctolagus cuniculus
(rabbit)
Length = 80
Score = 119 bits (60), Expect = 9e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 25 ggtatttgaagacgcggttgaccatggtgtgtacgctttatttatgacgtaggacacatg 84
||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1 ggtatctgaagatgcggttgaccatggtgtgtacgctttatctgtgacgtaggacacatg 60
Query: 85 gtctacttcttctcgatatc 104
|||||||||||||| |||||
Sbjct: 61 gtctacttcttctcaatatc 80
>RF00641;mir-154;ABRR01339481.1/284-363 30538:Lama pacos (alpaca)
Length = 80
Score = 101 bits (51), Expect = 2e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 38 gcggttgaccatggtgtgtacgctttatttatgacgtaggacacatggtctacttcttct 97
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 gcggtcgaccatggtgtgcacgctttatttgcgacgtaggacacatggtctacttcttct 73
Query: 98 cgatatc 104
|||||||
Sbjct: 74 cgatatc 80
>RF00641;mir-154;AAGU02503119.1/624-702 9785:Loxodonta africana
(African savanna elephant)
Length = 79
Score = 93.7 bits (47), Expect = 5e-19
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 38 gcggttgaccatggtgtgtacgctttatttatgacgtaggacacatggtctacttcttct 97
||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 gcggtcgaccatg-tgtgtacgctttatttacgacgtaggacacatggtctacttcttct 72
Query: 98 cgatatc 104
| |||||
Sbjct: 73 caatatc 79
