miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00600;SNORA79;AAFC03086346.1/34473-34328 9913:Bos taurus (cattle)
Length = 146
Score = 145 bits (73), Expect = 1e-34
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 26 tgatggctgatcctctcactactttataccttgggtagtgggattttagtccatcataga 85
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatggctgttcctctcactgctttataccttgggtagtgggattttagtccatcataga 60
Query: 86 gcaagcagatttgttttcacc 106
|||||||||||||||||||||
Sbjct: 61 gcaagcagatttgttttcacc 81
>RF00600;SNORA79;ABRN01448844.1/24384-24449 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 66
Score = 81.8 bits (41), Expect = 2e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 26 tgatggctgatcctctcactactttataccttgggtagtgggattttagtccatcataga 85
||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 1 tgatggctgtttctctcactactttacctcttgggtagtgggattttagtccatcatata 60
Query: 86 gcaag 90
|||||
Sbjct: 61 gcaag 65
>RF00600;SNORA79;ABRR01337618.1/2243-2388 30538:Lama pacos (alpaca)
Length = 146
Score = 79.8 bits (40), Expect = 6e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 26 tgatggctgatcctctcactactttataccttgggtagtgggattttagtccatcataga 85
||||||||| || ||||||||||| ||| | ||||||||||||||||||||||| | |
Sbjct: 1 tgatggctgttcgtctcactacttgtaaccctaggtagtgggattttagtccatcacaca 60
Query: 86 gcaagcagatttgttttcac 105
|||||||||| |||||||||
Sbjct: 61 gcaagcagatctgttttcac 80
>RF00600;SNORA79;ABRP01109874.1/2848-2706 132908:Pteropus vampyrus
(large flying fox)
Length = 143
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 26 tgatggctgatcctctcactactttataccttgggtagtgggattttagtccatcata 83
||||||||| |||||||||||||| |||| ||||||||| |||||| ||||||||
Sbjct: 1 tgatggctgttcctctcactacttggagccttaggtagtgggcttttagaccatcata 58
>RF00600;SNORA79;AANG01817357.1/394-540 9685:Felis catus (domestic
cat)
Length = 147
Score = 52.0 bits (26), Expect = 1e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 26 tgatggctgatcctctcactactttataccttgggtagtgggattttagtccatcata 83
||||||||| |||||||||| ||| | | ||| ||||||| |||||||||||||||||
Sbjct: 1 tgatggctgttcctctcactgctt-agagcttaggtagtgagattttagtccatcata 57
>RF00600;SNORA79;ABRQ01153712.1/1620-1474 9813:Procavia capensis
(cape rock hyrax)
Length = 147
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 26 tgatggctgatcctctcactactttataccttgggtagtgggattttagtccatcata 83
||||||||| |||||||||| ||| |||| || ||||||||||||||||||||||
Sbjct: 1 tgatggctgttcctctcactgcttggagccttaggcagtgggattttagtccatcata 58
>RF00600;SNORA79;AAFC03049649.1/69040-68900 9913:Bos taurus
(cattle)
Length = 141
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 gtagtgggattttagtccatcata 83
||||||||||||||||||||||||
Sbjct: 35 gtagtgggattttagtccatcata 58
>RF00600;SNORA79;AAFC03028993.1/42730-42876 9913:Bos taurus
(cattle)
Length = 147
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 gtagtgggattttagtccatcata 83
||||||||||||||||||||||||
Sbjct: 34 gtagtgggattttagtccatcata 57
>RF00600;SNORA79;AAFC03007245.1/50966-50824 9913:Bos taurus
(cattle)
Length = 143
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 gtagtgggattttagtccatcata 83
||||||||||||||||||||||||
Sbjct: 35 gtagtgggattttagtccatcata 58
>RF00600;SNORA79;AACN010109076.1/2566-2453 9615:Canis lupus
familiaris (dog)
Length = 114
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tagtgggattttagtccatcata 83
|||||||||||||||||||||||
Sbjct: 1 tagtgggattttagtccatcata 23
>RF00600;SNORA79;AAPN01395706.1/1339-1195 9258:Ornithorhynchus
anatinus (platypus)
Length = 145
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 tgggtagtgggattttagtccatcatagag 86
|||| |||||||||||||||||||| ||||
Sbjct: 32 tgggcagtgggattttagtccatcacagag 61
>RF00600;SNORA79;ABRR01221459.1/65428-65574 30538:Lama pacos
(alpaca)
Length = 147
Score = 44.1 bits (22), Expect = 4e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 26 tgatggctgatcctctcactactttataccttgggtagtgggattttagtccatcata 83
||||||||| |||||||||| ||| ||| ||||||| |||||||||||||||||
Sbjct: 1 tgatggctgttcctctcactgcttggagtcttaggtagtgagattttagtccatcata 58
>RF00600;SNORA79;AACZ02146891.1/21462-21315 9598:Pan troglodytes
(chimpanzee)
Length = 148
Score = 44.1 bits (22), Expect = 4e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 26 tgatggctgatcctctcactactttataccttgggtagtgggattttagtccatcata 83
||||||||| |||||||||| ||| | |||| || ||||||||||| |||||||||
Sbjct: 1 tgatggctgttcctctcactgcttgaagccttaggcagtgggattttgatccatcata 58
