miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02056441.1/23079-23166 9031:Gallus gallus
(chicken)
Length = 88
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataa 63
Query: 61 ctgtacaggccactgccttg 80
||||||||||||||||||||
Sbjct: 64 ctgtacaggccactgccttg 83
>RF00027;let-7;AAVX01039717.1/937-849 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 81.8 bits (41), Expect = 1e-15
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 5 gaggtagtagtttgtacagtttgagggtctatgataccacccggtaca-ggagataactg 63
|||||||| ||||||||||||||||||| | ||| |||||||||| | |||||||||||
Sbjct: 8 gaggtagttgtttgtacagtttgagggtttgtgacaccacccggttgatggagataactg 67
Query: 64 tacaggccactgccttg 80
|||| ||||||||||||
Sbjct: 68 tacaagccactgccttg 84
>RF00027;let-7;BAAE01044355.1/4683-4770 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 75.8 bits (38), Expect = 7e-14
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 3 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 62
|||||||||| ||||||||||||||||||||| |||| | |||| |||||||| |||||
Sbjct: 6 ctgaggtagttgtttgtacagtttgagggtctgtgattctgcccgatacaggagctaact 65
Query: 63 gtacaggccactgccttg 80
||||| | |||||||||
Sbjct: 66 gtacaagtgactgccttg 83
>RF00027;let-7;AANH01007698.1/145537-145624 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 ctgaggtagtagtttgtacagtttgagggtct 34
|||||||||| |||||||||||||||||||||
Sbjct: 6 ctgaggtagttgtttgtacagtttgagggtct 37
