miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 119 bits (60), Expect = 8e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 25 acatacttctttatgtgcccatatggacctgctaagctatggaatgtaaagaagtatgta 84
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccatatgaacctgctaagctatggaatgtaaagaagtatgta 69
Query: 85 tttcaggc 92
||||||||
Sbjct: 70 tttcaggc 77
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 107 bits (54), Expect = 3e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 19 tgggggacatacttctttatgtgcccatatggacctgctaagctatggaatgtaaagaag 78
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4 tgggagacatacttctttataatcccatatggacctgctaagctatggaatgtaaagaag 63
Query: 79 tatgtatttcaggc 92
||||||| ||||||
Sbjct: 64 tatgtatctcaggc 77
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 24 gacatacttctttatgtgcccatatggacctgctaagctatggaatgtaaagaagtatgt 83
||||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 9 gacatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtatgt 68
Query: 84 atttcagg 91
||||||||
Sbjct: 69 atttcagg 76
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 81.8 bits (41), Expect = 2e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 24 gacatacttctttatgtgcccatatggacctgctaagctatggaatgtaaagaagtatgt 83
||||||||||||||| |||||||||||| || | |||||||||||||||||||||||||
Sbjct: 9 gacatacttctttatatgcccatatggagct-cggagctatggaatgtaaagaagtatgt 67
Query: 84 atttcaggc 92
|| ||||||
Sbjct: 68 atctcaggc 76
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 16 gcttgggggacatacttctttatgtgcccatatggacctgctaagctatggaatgtaaag 75
||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct: 1 gcttgggagacatacttctttatacgcccatatggacttgctgcactatggaatgtaaag 60
Query: 76 aagtatgta 84
|||||||||
Sbjct: 61 aagtatgta 69
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 77.8 bits (39), Expect = 3e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 25 acatacttctttatgtgcccatatggacctgctaagctatggaatgtaaagaagtatgta 84
|||||||||||||||| |||||||| || | | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaaggctatggaatgtaaagaagtatgta 69
Query: 85 ttt 87
|||
Sbjct: 70 ttt 72
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 77.8 bits (39), Expect = 3e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 25 acatacttctttatgtgcccatatggacctgctaagctatggaatgtaaagaagtatgta 84
|||||||||||||||| |||||||| || | | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgta 69
Query: 85 ttt 87
|||
Sbjct: 70 ttt 72
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 16 gcttgggggacatacttctttatgtgcccatatggacctgctaagctatggaatgtaaag 75
||||||||||||||||||||||| |||||||||| || | | |||||||||||||||
Sbjct: 1 gcttgggggacatacttctttatatgcccatatgaacacgagcaactatggaatgtaaag 60
Query: 76 aagtatgtat 85
||||||||||
Sbjct: 61 aagtatgtat 70
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 65.9 bits (33), Expect = 1e-10
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 25 acatacttctttatgtgcccatatggacct--gctaagctatggaatgtaaagaagtatg 82
|||||||||||||||| ||||||||||| | | ||| ||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatggacatatgataa-ctatggaatgtaaagaagtatg 68
Query: 83 tatt 86
||||
Sbjct: 69 tatt 72
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 25 acatacttctttatgtgcccatatggacctgctaagctatggaatgtaaagaagtatgta 84
|||||||||||||||| |||||||| || | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 61.9 bits (31), Expect = 2e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 25 acatacttctttatgtgcccatatggacctgctaagctatggaatgtaaagaagtatgta 84
|||||||||||||||| |||||||| || | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacataa-atgctatggaatgtaaagaagtatgta 68
Query: 85 ttt 87
|||
Sbjct: 69 ttt 71
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 25 acatacttctttatgtgcccatatggacctgctaagctatggaatgtaaagaagtatgta 84
|||||||||||||||| |||||||| | | | | | |||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaagatacaatgttatggaatgtaaagaagtatgta 69
Query: 85 ttt 87
|||
Sbjct: 70 ttt 72
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 61.9 bits (31), Expect = 2e-09
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 19 tgggggacatacttctttatgtgcccatatg--gacctgctaagctatggaatgtaaaga 76
||||| |||||||||||||||| |||||||| || || |||||||||||||||||||
Sbjct: 4 tggggtacatacttctttatgtacccatatgaagatatga-aagctatggaatgtaaaga 62
Query: 77 agtatgtatt 86
||||||||||
Sbjct: 63 agtatgtatt 72
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 60.0 bits (30), Expect = 6e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 26 catacttctttatgtgcccatatggacctgctaagctatggaatgtaaagaagtatgtat 85
|||||||||| || |||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 11 catacttcttcatatgcccatatgaaa-tgctttgctatggaatgtaaagaagtatgtat 69
Query: 86 tt 87
||
Sbjct: 70 tt 71
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 agctatggaatgtaaagaagtatgtattt 87
|||||||||||||||||||||||||||||
Sbjct: 43 agctatggaatgtaaagaagtatgtattt 71
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 ctatggaatgtaaagaagtatgtatt 86
||||||||||||||||||||||||||
Sbjct: 49 ctatggaatgtaaagaagtatgtatt 74
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 tatggaatgtaaagaagtatgtat 85
||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tatggaatgtaaagaagtatgta 84
|||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tatggaatgtaaagaagtatgta 84
|||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 85
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tatggaatgtaaagaagtatgta 84
|||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tatggaatgtaaagaagtatgta 84
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tatggaatgtaaagaagtatgta 84
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tatggaatgtaaagaagtatgta 84
|||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ctatggaatgtaaagaagtatg 82
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ctatggaatgtaaagaagtatg 82
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
