miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 143 bits (72), Expect = 4e-34
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 2 ctgtatataccctgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatc 61
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctgtatataccctgtagatccgaatttgtgtaaggaattttgtgatcacaaattcgtatc 60
Query: 62 taggggaatatgtagt 77
||||||||||||||||
Sbjct: 61 taggggaatatgtagt 76
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 89.7 bits (45), Expect = 5e-18
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatctagggga 68
|||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgtgtaaaggaagttg-ggtcacaaattcgtatctagggga 66
Query: 69 atatgtagt 77
|||||||||
Sbjct: 67 atatgtagt 75
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 5 tatataccctgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatctag 64
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct: 4 tatataccctgtagatccgaatttgtgttgacaaaattgtggtcgcaaattcgtatctag 63
Query: 65 gggaatatgtagt 77
|||| ||||||||
Sbjct: 64 gggagtatgtagt 76
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 65.9 bits (33), Expect = 7e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 5 tatataccctgtagatccgaatttgtgtaaggaattttgtggtcacaaattcgtatctag 64
|||||||||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 4 tatataccctgtagatccgaatttgtgtgaaaagtcacacggtcacaaattcgtatctag 63
Query: 65 gggaatatgtagt 77
|||| ||||||||
Sbjct: 64 gggagtatgtagt 76
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 ctgtatataccctgtagatccgaatttgtgt 32
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctgtatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 accctgtagatccgaatttgtgtaa 34
|||||||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtgtaa 33
>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 accctgtagatccgaatttgtgtaa 34
|||||||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtgtaa 33
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tatataccctgtagatccgaatttgtgt 32
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tatataccctgtagatccgaatttgtgt 32
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tatataccctgtagatccgaatttgtgt 32
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tatataccctgtagatccgaatttgtgt 32
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tatataccctgtagatccgaatttgtgt 32
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgtgt 32
||||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
purpuratus
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 accctgtagatccgaatttgtgt 32
|||||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtgt 31
>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
Length = 69
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 accctgtagatccgaatttgtgt 32
|||||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtgt 31
>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
willistoni
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
grimshawi
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
mojavensis
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
castaneum (red flour beetle)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
(black-legged tick)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 taccctgtagatccgaatttgt 30
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
