miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 141 bits (71), Expect = 1e-33
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattct 62
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtggtatccacgtagtcacagattcgattct 60
Query: 63 aggggaatatatggt 77
|||||||||||||||
Sbjct: 61 aggggaatatatggt 75
>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
Length = 75
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattct 62
|||||||||||||||||||||||||||||||| | | || ||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtgatggcgtcaaagtcacagattcgattct 60
Query: 63 aggggaatatatgg 76
|||||| |||||||
Sbjct: 61 aggggagtatatgg 74
>RF00104;mir-10;AC145806.2/102674-102746 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 73
Score = 79.8 bits (40), Expect = 5e-15
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattct 62
|||||| |||||||||||||||||||||||||| | | | ||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtgg--ttcgtacagtcacagattcgattct 58
Query: 63 aggggaatatatggt 77
||||| |||||||||
Sbjct: 59 agggggatatatggt 73
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattct 62
|||||||||||||||||||||||||||||||| | | | ||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtgaagaacgctcaatcacagattcgattct 60
Query: 63 aggggaatatatggt 77
|||||| ||||||||
Sbjct: 61 aggggagtatatggt 75
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtg 34
||||||||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;ABPM01028404.1/870-945 106582:Maylandia zebra
(zebra mbuna)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtggtatccacatagtcacagattcgattct 62
|||||||||||||||||||||||||| ||||| | || | ||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaattggtgtgatgaaaccagattcacagattcgattct 60
Query: 63 agggg 67
|||||
Sbjct: 61 agggg 65
>RF00104;mir-10;AB232922.1/86430-86356 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtgg 35
|||||| ||||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtgg 33
>RF00104;mir-10;CAAB01001327.1/34126-34200 31033:Takifugu rubripes
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtg 34
|||||| |||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtg 34
|||||||||||||||||| |||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgtg 32
>RF00104;mir-10;BX546447.8/26541-26615 7955:Danio rerio
(zebrafish)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
||||||||||||||||||||||||| |||||
Sbjct: 1 ctatatataccctgtagaaccgaatgtgtgt 31
>RF00104;mir-10;BX005254.9/84183-84108 7955:Danio rerio
(zebrafish)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;EU025715.1/118732-118806 8030:Salmo salar
(Atlantic salmon)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtg 34
|||||| ||||||||||| |||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgtg 32
>RF00104;mir-10;AAWZ01028329.1/91871-91943 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 tatatataccctgtagaaccgaatttgtgtg 34
||||| |||||||||||| ||||||||||||
Sbjct: 2 tatatgtaccctgtagaatcgaatttgtgtg 32
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;FJ356145.1/1191-1265 8022:Oncorhynchus mykiss
(rainbow trout)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 accctgtagaaccgaatttgtgt 33
|||||||||||||||||||||||
Sbjct: 9 accctgtagaaccgaatttgtgt 31
>RF00104;mir-10;BAAE01206467.1/1361-1287 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 ataccctgtagaaccgaatttgtgtgg 35
||||||||||||||||||| |||||||
Sbjct: 7 ataccctgtagaaccgaatgtgtgtgg 33
