miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;AAYZ01325292.1/263-348 9978:Ochotona princeps
(American pika)
Length = 86
Score = 131 bits (66), Expect = 2e-30
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 6 gccttaaagtactgtagcagcacatcatggtttacatactacaatcaagatgcgaatcat 65
|||||||||||||||||||||||||||||||||||||| || | |||| |||||||||||
Sbjct: 1 gccttaaagtactgtagcagcacatcatggtttacataatatagtcaatatgcgaatcat 60
Query: 66 tatttgctgctctagaaatttaagga 91
|||||||||||||||||||||||||
Sbjct: 61 aatttgctgctctagaaatttaagga 86
>RF00455;mir-15;AADN02021066.1/63906-63821 9031:Gallus gallus
(chicken)
Length = 86
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 6 gccttaaagtactgtagcagcacatcatggtttacatactacaatcaagatgcgaatcat 65
||||||||||||| ||||||||||||||||||| ||| || | | ||||||||||||||
Sbjct: 1 gccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcat 60
Query: 66 tatttgctgctctagaaatttaagga 91
||||||||||| ||||||||||||||
Sbjct: 61 tatttgctgctttagaaatttaagga 86
>RF00455;mir-15;AAPN01094471.1/3183-3268 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 20 tagcagcacatcatggtttacatactacaatcaagatgcgaatcattatttgctgctcta 79
||||||||||||||||||| ||| || | |||||||||||||||||||||||||| ||
Sbjct: 15 tagcagcacatcatggtttgcatggtatagccaagatgcgaatcattatttgctgcttta 74
Query: 80 gaaatttaagga 91
||||||||||||
Sbjct: 75 gaaatttaagga 86
>RF00455;mir-15;AAFR03046999.1/49599-49513 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 56 tgcgaatcattatttgctgctctagaaatttaagg 90
||||||||||||||||||||| |||||||||||||
Sbjct: 52 tgcgaatcattatttgctgctttagaaatttaagg 86
>RF00455;mir-15;AANH01002998.1/16865-16950 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 tgcgaatcattatttgctgctctagaaatttaagga 91
|||||| |||||||||||||| ||||| ||||||||
Sbjct: 51 tgcgaaccattatttgctgctttagaattttaagga 86
>RF00455;mir-15;BAAF04019869.1/1029-1115 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 tgcgaatcattatttgctgctctagaaatttaagga 91
|||||| |||||||||||||| ||||| ||||||||
Sbjct: 52 tgcgaaccattatttgctgctttagaattttaagga 87
>RF00455;mir-15;ABQF01022934.1/39859-39944 59729:Taeniopygia
guttata
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 aagtactgtagcagcacatcatggttt 38
|||| ||||||||||||||||||||||
Sbjct: 7 aagtgctgtagcagcacatcatggttt 33
>RF00455;mir-15;AAWZ01001750.1/5603-5688 28377:Anolis carolinensis
(green anole)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 ttaaagtactgtagcagcacatcatg 34
|||||||||| |||||||||||||||
Sbjct: 4 ttaaagtactctagcagcacatcatg 29
>RF00455;mir-15;CT027989.8/7473-7560 7955:Danio rerio (zebrafish)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 ctgtagcagcacatcatggttt 38
||||||||||||||||||||||
Sbjct: 12 ctgtagcagcacatcatggttt 33
>RF00455;mir-15;AAVX01576111.1/286-371 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 ctgtagcagcacatcatggttt 38
||||||||||||||||||||||
Sbjct: 12 ctgtagcagcacatcatggttt 33
