miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;ABRQ01058087.1/3558-3638 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 5 ctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtg 66
Query: 65 ctgctttag 73
|||||||||
Sbjct: 67 ctgctttag 75
>RF00254;mir-16;AADN02021066.1/63731-63651 9031:Gallus gallus
(chicken)
Length = 81
Score = 105 bits (53), Expect = 8e-23
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct: 3 tccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattat 62
Query: 61 tgtgctgctttagcgtg 77
|||||||||| ||||||
Sbjct: 63 tgtgctgcttaagcgtg 79
>RF00254;mir-16;AAPN01094471.1/3343-3419 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 75.8 bits (38), Expect = 7e-14
Identities = 66/75 (88%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 3 cgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattg 62
||||||||||||||||||||||||| ||||| || | |||||| ||||||||||||
Sbjct: 5 cgctctagcagcacgtaaatattggtgtagtgaagtc----ttaaaccccaatattattg 60
Query: 63 tgctgctttagcgtg 77
|||||||||||||||
Sbjct: 61 tgctgctttagcgtg 75
>RF00254;mir-16;ABQF01022934.1/40019-40098 59729:Taeniopygia
guttata
Length = 80
Score = 65.9 bits (33), Expect = 7e-11
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
||||| ||||||||||||||||||||| || || ||| ||| || ||| ||||||||||
Sbjct: 3 tccgccctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatattat 61
Query: 61 tgtgctgctttagcgtg 77
|||||||||| ||||||
Sbjct: 62 tgtgctgcttcagcgtg 78
>RF00254;mir-16;ABQO011210750.1/1431-1352 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 63.9 bits (32), Expect = 3e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 2 ccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattatt 61
||||||||||||||||||||||||||||| || | || | | | ||| |||||||||||
Sbjct: 4 ccgctctagcagcacgtaaatattggcgtcgtgagat-actggtgaaccccaatattatt 62
Query: 62 gtgctgctttagcgtg 77
||||||||| ||||||
Sbjct: 63 gtgctgcttcagcgtg 78
>RF00254;mir-16;AAPY01269253.1/1011-1090 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/69 (89%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 5 ctctagcagcacgta-aatattggcgtagtaaaataaatattaaacaccaatattattgt 63
||||||||||||||| |||| ||| | ||| |||||| |||||||||||| |||||||||
Sbjct: 7 ctctagcagcacgtacaataatggggaagtgaaataa-tattaaacacca-tattattgt 64
Query: 64 gctgcttta 72
|||||||||
Sbjct: 65 gctgcttta 73
>RF00254;mir-16;AAIY01049521.1/711-785 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 9 agcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtgctgc 68
||||||| |||||| |||| |||| ||||||||| ||| || |||||||||||||||||
Sbjct: 8 agcagcatataaatactggcatagtgaaataaatactaa-catcaatattattgtgctgc 66
Query: 69 ttta 72
||||
Sbjct: 67 ttta 70
>RF00254;mir-16;AAVX01576107.1/322-406 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tctagcagcacgtaaatattggcgt 30
|||||||||||||||||||||||||
Sbjct: 8 tctagcagcacgtaaatattggcgt 32
>RF00254;mir-16;BAAF04019869.1/1288-1368 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 cgctctagcagcacgtaaatattggcgt 30
|||| |||||||||||||||||||||||
Sbjct: 5 cgctgtagcagcacgtaaatattggcgt 32
>RF00254;mir-16;AADN02005381.1/19775-19853 9031:Gallus gallus
(chicken)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ctctagcagcacgtaaatattgg 27
|||||||||||||||||||||||
Sbjct: 7 ctctagcagcacgtaaatattgg 29
>RF00254;mir-16;CR478286.10/109802-109722 7955:Danio rerio
(zebrafish)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 cgctctagcagcacgtaaatattgg 27
|||| ||||||||||||||||||||
Sbjct: 5 cgctttagcagcacgtaaatattgg 29
>RF00254;mir-16;CAAB01000783.1/48863-48783 31033:Takifugu rubripes
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 cgctctagcagcacgtaaatattgg 27
|||| ||||||||||||||||||||
Sbjct: 5 cgctttagcagcacgtaaatattgg 29
