miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 101 bits (51), Expect = 1e-21
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 3 ataatgtcaaagtgcttacagtgcaggtagtgataatgtgcatctactgcagtgaaggca 62
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 6 ataatgtcaaagtgcttacagtgcaggtagtggt-gtgtgcatctactgcagtgaaggca 64
Query: 63 cttgtagcatt 73
||||| |||||
Sbjct: 65 cttgtggcatt 75
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 4 taatgtcaaagtgcttacagtgcaggtagtgataatgtgcatctactgcagtgaaggcac 63
|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 7 taatgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcac 66
Query: 64 ttgtagcattatg 76
|||||||||||||
Sbjct: 67 ttgtagcattatg 79
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 54/59 (91%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 7 tgtcaaagtgcttacagtgcaggtagtgataatgtgcatctactgcagtgaaggcactt 65
||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt-ttgatg-acatctactgcagtgaaggcactt 66
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 taatgtcaaagtgcttacagtgcaggtagtg 34
|||||||||||||||||||||||||||||||
Sbjct: 7 taatgtcaaagtgcttacagtgcaggtagtg 37
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 7 tgtcaaagtgcttacagtgcaggtagtgataatgtgcatctactgcagtgaaggcacttg 66
||||||||||||||||||||||||||| || | ||||||||||||| ||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtattatggaatatctactgcagtggaggcacttc 69
Query: 67 tagca 71
|||||
Sbjct: 70 tagca 74
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtcaaagtgcttacagtgcaggtagt 33
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtcaaagtgcttacagtgcaggtagt 33
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtcaaagtgcttacagtgcaggtagt 33
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtcaaagtgcttacagtgcaggtagt 33
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtcaaagtgcttacagtgcaggtagt 33
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AAPN01282049.1/1442-1526 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 44 atctactgcagtgaaggcacttgtagcatt 73
|||| |||||||||||||||||||||||||
Sbjct: 49 atctgctgcagtgaaggcacttgtagcatt 78
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 aaagtgcttacagtgcaggtagtgat 36
||||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgat 39
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 aaagtgcttacagtgcaggtagtgat 36
||||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgat 39
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 aaagtgcttacagtgcaggtagtga 35
|||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtga 38
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 atgtcaaagtgcttacagtgcaggtagt 33
|||| |||||||||||||||||||||||
Sbjct: 9 atgtaaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 caaagtgcttacagtgcaggtagt 33
||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aaagtgcttacagtgcaggtag 32
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aaagtgcttacagtgcaggtag 32
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aaagtgcttacagtgcaggtag 32
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BX511227.7/25357-25277 7955:Danio rerio
(zebrafish)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 caaagtgcttacagtgcaggtagtg 34
||||||||| |||||||||||||||
Sbjct: 13 caaagtgctcacagtgcaggtagtg 37
