miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;AADN02029366.1/35306-35235 9031:Gallus gallus
(chicken)
Length = 72
Score = 133 bits (67), Expect = 4e-31
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 8 tctgttagttttgcatagttgcactacaagaagaatgtagttgtgcaaatctatgcaaaa 67
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2 tctgttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaa 61
Query: 68 ctgatggtggc 78
|||||||||||
Sbjct: 62 ctgatggtggc 72
>RF00245;mir-19;BAAF04006740.1/10225-10154 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 97.6 bits (49), Expect = 2e-20
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 7 ctctgttagttttgcatagttgcactacaagaaga-atgtagttgtgcaaatctatgcaa 65
||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 1 ctctgctagttttgcatagttgcactacaagaatagatg-agttgtgcaaatctatgcaa 59
Query: 66 aactgatggtggc 78
|||||||||||||
Sbjct: 60 aactgatggtggc 72
>RF00245;mir-19;BAAE01210639.1/2145-2074 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 81.8 bits (41), Expect = 1e-15
Identities = 67/73 (91%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 7 ctctgttagttttgcatagttgcactacaagaaga-atgtagttgtgcaaatctatgcaa 65
|||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct: 1 ctctgttagttttgcatagttgcactgcaagaagagatg-cgttgtgcaaatctatgcaa 59
Query: 66 aactgatggtggc 78
| ||||| |||||
Sbjct: 60 agctgatagtggc 72
>RF00245;mir-19;ABPJ01018453.1/307-378 35575:Mchenga conophoros
Length = 72
Score = 79.8 bits (40), Expect = 5e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 11 gttagttttgcatagttgcactacaagaagaatgtagttgtgcaaatctatgcaaaactg 70
||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct: 5 gttagttttgcgtagttgcgctgcaagaagaaataagttgtgcaaatctatgcaaaactg 64
Query: 71 atggtggc 78
| ||||||
Sbjct: 65 acggtggc 72
>RF00245;mir-19;AAPN01106467.1/17825-17895 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 77.8 bits (39), Expect = 2e-14
Identities = 49/51 (96%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 21 catagttgcactacaagaagaatgtagttgtgcaaatctatgcaaaactga 71
|||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15 cataattgcactacaagaagaatgtag-tgtgcaaatctatgcaaaactga 64
>RF00245;mir-19;ABRR01406939.1/1751-1822 30538:Lama pacos (alpaca)
Length = 72
Score = 65.9 bits (33), Expect = 7e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 7 ctctgttagttttgcatagttgcactacaagaagaatgtagttgtgcaaatctatgcaaa 66
|||||| ||||||| ||| || ||||| |||||||||||| ||||||||| |||||||||
Sbjct: 1 ctctgtcagttttgtatactttcactataagaagaatgtaattgtgcaaacctatgcaaa 60
Query: 67 a 67
|
Sbjct: 61 a 61
>RF00245;mir-19;AAPN01215107.1/7965-8033 9258:Ornithorhynchus
anatinus (platypus)
Length = 69
Score = 63.9 bits (32), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 7 ctctgttagttttgcatagttgcactacaagaagaatgtagttgtgcaaatctatgcaaa 66
|||| ||||||| |||||||||||| |||||||||||||||| | |||||||| ||||
Sbjct: 1 ctctattagtttagcatagttgcac---aagaagaatgtagttgcgtaaatctatacaaa 57
Query: 67 actgat 72
||||||
Sbjct: 58 actgat 63
>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
anatinus (platypus)
Length = 63
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 gttgtgcaaatctatgcaaaactga 71
|||||||||||||||||||||||||
Sbjct: 32 gttgtgcaaatctatgcaaaactga 56
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 tgtgcaaatctatgcaaaactgatggtggc 78
|||||||||| ||||||||||||| |||||
Sbjct: 47 tgtgcaaatccatgcaaaactgattgtggc 76
