miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 109 bits (55), Expect = 5e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 6 ttagttttgcaggtttgcatttcagcgtatgtatgtgtatatggctgtgcaaatccatgc 65
|||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtatacctgtatacatggctgtgcaaatccatgc 65
Query: 66 aaaactgattgtgat 80
|||||||||||||||
Sbjct: 66 aaaactgattgtgat 80
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 105 bits (53), Expect = 8e-23
Identities = 74/80 (92%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 tacagttagttttgcaggtttgcatttcagcgtatgtatgtgtatatggctgtgcaaatc 60
|||||| |||||||||||||||||||||||| |||||| | | ||||||||||||||||
Sbjct: 1 tacagtgagttttgcaggtttgcatttcagc--atgtatttatgtatggctgtgcaaatc 58
Query: 61 catgcaaaactgattgtgat 80
||||||||||||||||||||
Sbjct: 59 catgcaaaactgattgtgat 78
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 103 bits (52), Expect = 3e-22
Identities = 72/77 (93%), Gaps = 5/77 (6%)
Strand = Plus / Plus
Query: 6 ttagttttgcaggtttgcatttcagcgtatgtatgtgtatat--ggctgtgcaaatccat 63
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtat---tgtgtatatcaggctgtgcaaatccat 62
Query: 64 gcaaaactgattgtgat 80
|||||||||||||||||
Sbjct: 63 gcaaaactgattgtgat 79
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 101 bits (51), Expect = 1e-21
Identities = 75/82 (91%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 tacagttagttttgcaggtttgcatttcagcgtatg--tatgtgtatatggctgtgcaaa 58
|||| |||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct: 1 tacaattagttttgcaggtttgcatttcagcgtatagatatatctacatggctgtgcaaa 60
Query: 59 tccatgcaaaactgattgtgat 80
||||||||||||||||||||||
Sbjct: 61 tccatgcaaaactgattgtgat 82
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 99.6 bits (50), Expect = 5e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 3 cagttagttttgcaggtttgcatttcagcgtatgtatgtgtatatggctgtgcaaatcca 62
||||||||||||||||||||||||||||||||| || | || | |||||||||||||||
Sbjct: 3 cagttagttttgcaggtttgcatttcagcgtatataaatctacagggctgtgcaaatcca 62
Query: 63 tgcaaaactgattgtgat 80
||||||||||| ||||||
Sbjct: 63 tgcaaaactgactgtgat 80
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 6 ttagttttgcaggtttgcatttcagcgtatgtatgtgtatatggctgtgcaaatccatgc 65
|||||||||||| |||||| |||||||||| | || |||||||||||||||||||||||
Sbjct: 6 ttagttttgcagatttgcagttcagcgtatatgtgaatatatggctgtgcaaatccatgc 65
Query: 66 aaaactgattgtg 78
|||||||||||||
Sbjct: 66 aaaactgattgtg 78
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 89.7 bits (45), Expect = 5e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 5 gttagttttgcaggtttgcatttcagcgtatgtatgtgtatatggctgtgcaaatccatg 64
|||||||||||||||||||||||||||||| | || |||| |||||||||||||||||
Sbjct: 5 gttagttttgcaggtttgcatttcagcgtacttgtgcatatagggctgtgcaaatccatg 64
Query: 65 caaaactga 73
|||||||||
Sbjct: 65 caaaactga 73
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 85.7 bits (43), Expect = 8e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 6 ttagttttgcaggtttgcatttcagcgtatgtatgtgtatatggctgtgcaaatccatgc 65
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtatatataaaggggtggctgtgcaaatccatgc 65
Query: 66 aaaactgattgtgat 80
|||||||||||||||
Sbjct: 66 aaaactgattgtgat 80
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 83.8 bits (42), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 1 tacagttagttttgcaggtttgcatttcagcgtatgtatgtgtatatggctgtgcaaatc 60
||||||||||||||||||||||||||||||| || || ||| |||||||||||||
Sbjct: 1 tacagttagttttgcaggtttgcatttcagcatacacata---atacggctgtgcaaatc 57
Query: 61 catgcaaaactgattgtgat 80
||||||||||||||||||||
Sbjct: 58 catgcaaaactgattgtgat 77
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 83.8 bits (42), Expect = 3e-16
Identities = 65/73 (89%), Gaps = 6/73 (8%)
Strand = Plus / Plus
Query: 1 tacagttagttttgcaggtttgcatttcagcgtatgtatgtgtatatggctgtgcaaatc 60
|||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 1 tacagttagttttgcaggtttgcattgcag------tatatgtatatggctgtgcaaatc 54
Query: 61 catgcaaaactga 73
|||||||||||||
Sbjct: 55 catgcaaaactga 67
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactgattgtg 78
||||||||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgattgtg 74
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactgatt 75
|||||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactgatt 68
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactgatt 75
|||||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgatt 71
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactgattgtg 78
||||||||||||||||||||||||| ||||
Sbjct: 41 gctgtgcaaatccatgcaaaactgaatgtg 70
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactgattgtg 78
||||||||||||||||||||||||| ||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgactgtg 72
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactgattgtg 78
||||||||||||||||||||||||| ||||
Sbjct: 44 gctgtgcaaatccatgcaaaactgactgtg 73
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactgat 74
||||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgat 68
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactgat 74
||||||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaactgat 69
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactga 73
|||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactga 73
|||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaactga 73
|||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactga 69
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 gctgtgcaaatccatgcaaaact 71
|||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaact 66
