miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00178;mir-24;ABRQ01065900.1/2864-2931 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 123 bits (62), Expect = 3e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 7 ctcccgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcagg 66
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcctgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcagg 60
Query: 67 aacagg 72
||||||
Sbjct: 61 aacagg 66
>RF00178;mir-24;ABRO01400204.1/704-771 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 68
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 7 ctcccgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcagg 66
||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct: 1 ctcccgtgcctactgagctgaaacacagttggtttgatcgcactggctcagttcagcagg 60
Query: 67 aacagg 72
||||||
Sbjct: 61 aacagg 66
>RF00178;mir-24;AAPY01721327.1/524-457 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 7 ctcccgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcagg 66
|||||| |||||| ||||||| ||||| ||| ||||| ||||||||||||||||||||||
Sbjct: 1 ctcccgcgcctaccgagctgacacacacttggtttgtacagactggctcagttcagcagg 60
Query: 67 aacagg 72
||||||
Sbjct: 61 aacagg 66
>RF00178;mir-24;AAWZ01000886.1/15313-15246 28377:Anolis
carolinensis (green anole)
Length = 68
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 10 ccgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcaggaac 69
|||||||||||||||||| || |||||| ||| | ||||||||||||||||||||||
Sbjct: 4 ccgtgcctactgagctgatactcagttgctttagataaactggctcagttcagcaggaac 63
Query: 70 agg 72
|||
Sbjct: 64 agg 66
>RF00178;mir-24;AAKN02038501.1/43560-43494 10141:Cavia porcellus
(domestic guinea pig)
Length = 67
Score = 52.0 bits (26), Expect = 9e-07
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 7 ctcccgtgcctactgagctgaaacacagttgatttgtgcagactggctcagttcagcagg 66
|||| |||||||||||||||| | ||||| |||| || |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatat-cagttctcttgtacacactggctcagttcagcagg 59
Query: 67 aacagg 72
||||||
Sbjct: 60 aacagg 65
>RF00178;mir-24;CU138547.13/98214-98280 7955:Danio rerio
(zebrafish)
Length = 67
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 gactggctcagttcagcaggaacagg 72
||||||||||||||||||||||||||
Sbjct: 40 gactggctcagttcagcaggaacagg 65
>RF00178;mir-24;AAVX01198958.1/114-181 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 52.0 bits (26), Expect = 9e-07
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 12 gtgcctactgagctgaaacacagttgat-ttgtgcagactggctcagttcagcaggaaca 70
|||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgata-acagttgatattgtttgcactggctcagttcagcaggaaca 64
Query: 71 gg 72
||
Sbjct: 65 gg 66
>RF00178;mir-24;AADN02067827.1/6632-6699 9031:Gallus gallus
(chicken)
Length = 68
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>RF00178;mir-24;CR847548.8/141549-141614 7955:Danio rerio
(zebrafish)
Length = 66
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 40 actggctcagttcagcaggaacagg 64
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 ctcccgtgcctactgagctga 27
|||||||||||||||||||||
Sbjct: 1 ctcccgtgcctactgagctga 21
>RF00178;mir-24;CT027840.6/8959-9024 7955:Danio rerio (zebrafish)
Length = 66
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 40 actggctcagttcagcaggaacagg 64
>RF00178;mir-24;BAAF04082680.1/2546-2479 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagg 66
>RF00178;mir-24;BAAF04040483.1/10387-10453 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaacagg 65
>RF00178;mir-24;AANN01357153.1/1098-1031 9365:Erinaceus europaeus
(western European hedgehog)
Length = 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 50/56 (89%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 15 cctactgagctgaaacacagttgatttg-tgcagactggctcagttcagcaggaac 69
|||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct: 9 cctactgaactgaaacacagtttttttcatgca-actggctcagttcagcaggaac 63
>RF00178;mir-24;CU855875.13/13048-13115 7955:Danio rerio
(zebrafish)
Length = 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacagg 72
||||||||||||||||||||||||
Sbjct: 43 ctggctcagttcagcaggaacagg 66
>RF00178;mir-24;BAAE01102385.1/1423-1489 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacagg 72
||||||||||||||||||||||||
Sbjct: 42 ctggctcagttcagcaggaacagg 65
>RF00178;mir-24;CAAB01008725.1/106-172 31033:Takifugu rubripes
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaac 69
||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaac 62
>RF00178;mir-24;AANH01005378.1/80152-80082 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaac 69
||||||||||||||||||||||
Sbjct: 45 actggctcagttcagcaggaac 66
>RF00178;mir-24;BAAF04038250.1/1131-1201 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaac 69
||||||||||||||||||||||
Sbjct: 45 actggctcagttcagcaggaac 66
