miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;AAFR03027068.1/11019-11101 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 119 bits (60), Expect = 5e-27
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
|||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||
Sbjct: 8 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 67
Query: 64 aagttctgcacctgaa 79
||||||||||||||||
Sbjct: 68 aagttctgcacctgaa 83
>RF00644;mir-27;BAAF04040483.1/6623-6705 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 115 bits (58), Expect = 9e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 9 cagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagtt 68
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 13 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 72
Query: 69 ctgcacctga 78
||||||||||
Sbjct: 73 ctgcacctga 82
>RF00644;mir-27;AAVX01114775.1/589-508 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 107 bits (54), Expect = 2e-23
Identities = 73/78 (93%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 2 cgaggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtgg 61
||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||
Sbjct: 6 cgaggtgcagagcttagctgattggtgaacagtga-ttgttgttgctttgttcacagtgg 64
Query: 62 ctaagttctgcacctgaa 79
||||||||||||||||||
Sbjct: 65 ctaagttctgcacctgaa 82
>RF00644;mir-27;AAPN01152921.1/1247-1165 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 8 gcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagt 67
||||||||||||||||||||||||||||| || | | |||||||||||||||||||||
Sbjct: 12 gcagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagt 71
Query: 68 tctgc 72
|||||
Sbjct: 72 tctgc 76
>RF00644;mir-27;CR847548.8/136623-136702 7955:Danio rerio
(zebrafish)
Length = 80
Score = 81.8 bits (41), Expect = 1e-15
Identities = 67/75 (89%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 8 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 64
Query: 64 aagttctgcacctga 78
|||||||||| ||||
Sbjct: 65 aagttctgcatctga 79
>RF00644;mir-27;CT027840.6/2845-2927 7955:Danio rerio (zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 tttgttcacagtggctaagttctgcacc 75
||||||||||||||||||||||| ||||
Sbjct: 52 tttgttcacagtggctaagttcttcacc 79
>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgttcacagtggctaagttctgcacct 76
|||||||||||||||||||| ||||||
Sbjct: 57 tgttcacagtggctaagttccgcacct 83
>RF00644;mir-27;BAAF04073622.1/5313-5395 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 ttgttcacagtggctaagttctgcacctga 78
||||||||||||||||||||| | ||||||
Sbjct: 53 ttgttcacagtggctaagttcagtacctga 82
