miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00655;mir-28;ABRQ01069155.1/829-914 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 ggtccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactaga 60
||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 1 ggtccctgccctcaaggagctcacagtctattgagttgcctttctgacttccccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>RF00917;mir-708;ABRQ01069155.1/911-831 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 137 bits (69), Expect = 3e-32
Identities = 75/77 (97%)
Strand = Plus / Minus
Query: 7 tgccctcaaggagctcacactctattgagttgcctttctgtcttccccactagattgtga 66
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 77 tgccctcaaggagctcacagtctattgagttgcctttctgacttccccactagattgtga 18
Query: 67 gctcctggagggcaggc 83
|||||||||||||||||
Sbjct: 17 gctcctggagggcaggc 1
>RF00917;mir-708;ABRR01063579.1/2239-2159 30538:Lama pacos
(alpaca)
Length = 81
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Minus
Query: 4 ccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactagattg 63
|||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||
Sbjct: 80 ccttgccctcaaggagctcacagtctattgagttgcctttctgcctttcccactagattt 21
Query: 64 tgagctcctggagggcaggc 83
||||||||||||||||||||
Sbjct: 20 tgagctcctggagggcaggc 1
>RF00917;mir-708;AAKN02012362.1/20992-20912 10141:Cavia porcellus
(domestic guinea pig)
Length = 81
Score = 97.6 bits (49), Expect = 2e-20
Identities = 73/81 (90%)
Strand = Plus / Minus
Query: 3 tccttgccctcaaggagctcacactctattgagttgcctttctgtcttccccactagatt 62
||||||||||||||||||||||| ||||||||||| | ||| | ||| |||||||||||
Sbjct: 81 tccttgccctcaaggagctcacagtctattgagttacttttaagactttcccactagatt 22
Query: 63 gtgagctcctggagggcaggc 83
| |||||||||||||||||||
Sbjct: 21 gggagctcctggagggcaggc 1
>RF00917;mir-708;AAHX01070100.1/15768-15688 10116:Rattus
norvegicus (Norway rat)
Length = 81
Score = 85.7 bits (43), Expect = 8e-17
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 13 caaggagctcacactctattgagttgcctttctgtcttccccactagattgtgagctcct 72
||||||||||||| ||||||||||| | |||||| | |||||||||||||||||||||
Sbjct: 71 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 12
Query: 73 ggagggcaggc 83
|||||||||||
Sbjct: 11 ggagggcaggc 1
