miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;AAKN02041734.1/76573-76630 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 58

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                    
Query: 11 tgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtttact 68
          |||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct: 1  tgtaaacatcctacactcagctgtaatatatgaattggctgggaggtgggtgtttact 58




>RF00131;mir-30;AAHX01051344.1/20846-20903 10116:Rattus norvegicus
          (Norway rat)
          Length = 58

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                   
Query: 11 tgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtttac 67
          |||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||
Sbjct: 1  tgtaaacatcctacactcagctgtcatacatgagttggctgggatgtggatgtttac 57




>RF00131;mir-30;AAYZ01122952.1/2610-2553 9978:Ochotona princeps
          (American pika)
          Length = 58

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                   
Query: 11 tgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtttac 67
          ||||||||||||||||||||||||||| | || | ||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactcagctgtaatgcttgaactggctgggaggtggatgtttac 57




>RF00131;mir-30;AAFC03029853.1/55200-55143 9913:Bos taurus
          (cattle)
          Length = 58

 Score = 75.8 bits (38), Expect = 7e-14
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                    
Query: 11 tgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtttact 68
          |||||||||||||||||||||||||| ||| |  | ||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtggatgtttact 58




>RF00131;mir-30;AANN01840061.1/697-754 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 58

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                   
Query: 11 tgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtttac 67
          |||||||||||||||||||||||| | |||  || ||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactcagctgttacacagagactggctgggaggtggatgtttac 57




>RF00131;mir-30;AAWZ01001946.1/124724-124667 28377:Anolis
          carolinensis (green anole)
          Length = 58

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                    
Query: 11 tgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtttact 68
          |||||||||||||||||||||||||  ||||| | |||||||||| || |||||||||
Sbjct: 1  tgtaaacatcctacactcagctgtatcacatgaaatggctgggagatgaatgtttact 58




>RF00131;mir-30;ABRQ01189397.1/2111-2054 9813:Procavia capensis
          (cape rock hyrax)
          Length = 58

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                    
Query: 11 tgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtttact 68
          ||||||||||||||||||||||||   ||| | | |||||||||||||| ||||||||
Sbjct: 1  tgtaaacatcctacactcagctgtggcacacgcactggctgggaggtgggtgtttact 58




>RF00131;mir-30;AADN02022376.1/2269-2326 9031:Gallus gallus
          (chicken)
          Length = 58

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                    
Query: 11 tgtaaacatcctacactcagctgtaatacatggattggctgggaggtggatgtttact 68
          |||||||||||||||||||||| ||| |  |||   ||||||| ||||||||||||||
Sbjct: 1  tgtaaacatcctacactcagctataacaagtggtagggctggggggtggatgtttact 58




>RF00131;mir-30;AAPN01319291.1/21843-21900 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 58

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgtaaacatcctacactcagctgt 34
          ||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactcagctgt 24




>RF00131;mir-30;BX571853.4/12957-12899 7955:Danio rerio
          (zebrafish)
          Length = 59

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgtaaacatcctacactcagctgt 34
          ||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctacactcagctgt 24