miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;AAKN02055704.1/76333-76394 10141:Cavia porcellus
(domestic guinea pig)
Length = 62
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcggatgttta 68
|||||||||||||||||||||||||| | | |||| |||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtaaagtgttcagaggagctttcagtcggatgttta 60
Query: 69 ca 70
||
Sbjct: 61 ca 62
>RF00131;mir-30;AADN02043797.1/10718-10657 9031:Gallus gallus
(chicken)
Length = 62
Score = 75.8 bits (38), Expect = 7e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcggatgttta 68
|||||||||||||||||||||||||||||| || | || |||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtgaggtgtcagcgggggctttcagtcggatgttta 60
Query: 69 ca 70
||
Sbjct: 61 ca 62
>RF00131;mir-30;AAWZ01013131.1/23739-23678 28377:Anolis
carolinensis (green anole)
Length = 62
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcggatgttta 68
||||||||||||||||||||||||||| | || ||| |||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtgcaaggctcaaaggggctttcagtcggatgttta 60
Query: 69 ca 70
||
Sbjct: 61 ca 62
>RF00131;mir-30;ABQF01061949.1/5737-5797 59729:Taeniopygia guttata
Length = 61
Score = 60.0 bits (30), Expect = 4e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcggatgttta 68
||||||||||||||||||||||||| || | | | |||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg-gaagggctggaaggagctttcagtcggatgttta 59
Query: 69 ca 70
||
Sbjct: 60 ca 61
>RF00131;mir-30;AAVX01474940.1/155-214 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 56.0 bits (28), Expect = 7e-08
Identities = 52/59 (88%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtgaggcgttcccaggagctttcagtcggatgttt 67
|||||||||||| ||||||||||||||||| | || | | ||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtgagggg--ccaatgggctttcagtcggatgttt 57
>RF00131;mir-30;AANH01002293.1/5342-5405 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtg 35
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtg 27
>RF00131;mir-30;CR356236.12/41533-41474 7955:Danio rerio
(zebrafish)
Length = 60
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctg 33
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;CAAB01000598.1/36787-36849 31033:Takifugu rubripes
Length = 63
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctg 33
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;BAAF04002319.1/6281-6343 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctg 33
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;BAAF04079177.1/18181-18241 8090:Oryzias latipes
(Japanese medaka)
Length = 61
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctg 33
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;ABRQ01009475.1/3495-3435 9813:Procavia capensis
(cape rock hyrax)
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtga 36
|||||||||||| |||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtga 28
>RF00131;mir-30;AADN02002528.1/88445-88506 9031:Gallus gallus
(chicken)
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtga 36
|||||||||||| |||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtga 28
>RF00131;mir-30;ABRT010169987.1/2049-1991 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 tgtaaacatccttgactggaagctgtg 35
|||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtg 27
