miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABRO01055556.1/2540-2461 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctgataaaaccaatcactaaccacac 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 agtctagttactaggcagtgtagttagctgattgctgaccgtaccaatcactaaccacac 61
Query: 61 ggccaggtaaaaaga 75
|||||||||||||||
Sbjct: 62 ggccaggtaaaaaga 76
>RF00456;mir-34;ABVD01341709.1/1775-1696 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 80
Score = 115 bits (58), Expect = 9e-26
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctgataaaaccaatcactaaccacac 60
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 2 agtctggttactaggcagtgtagttagctgattgctattagtaccaatcactaaccacac 61
Query: 61 ggccaggtaaaaagattt 78
||||||||||||||||||
Sbjct: 62 ggccaggtaaaaagattt 79
>RF00456;mir-34;AAPN01276489.1/4603-4524 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 109 bits (55), Expect = 5e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctgataaaaccaatcactaaccacac 60
|||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 2 agtctagttactaggcagtgtagttagctgattgctattaacaccaatcactagccacac 61
Query: 61 ggccaggtaaaaaga 75
||||||||||||||
Sbjct: 62 agccaggtaaaaaga 76
>RF00456;mir-34;ABRQ01219522.1/667-588 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 105 bits (53), Expect = 8e-23
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctgataaaaccaatcactaaccacac 60
||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 2 agtctggttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 61
Query: 61 ggccaggtaaaaagatt 77
|||||||||| |||||
Sbjct: 62 agccaggtaaagagatt 78
>RF00456;mir-34;AADN02058045.1/6075-5997 9031:Gallus gallus
(chicken)
Length = 79
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 7 gttactaggcagtgtagttagctgattgctgataaaaccaatcactaaccacacggccag 66
||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>RF00456;mir-34;ABQF01045704.1/20460-20539 59729:Taeniopygia
guttata
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattgctgataaaaccaatcactaaccacacggccaggtaaaa 72
||||||||||||||||||||||| | | | ||||||||| ||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattgcccaaagcaacaatcactagccacacggccaggtaaaa 73
Query: 73 ag 74
||
Sbjct: 74 ag 75
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 13 taggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 13 taggcagtgtagttagctgattg 35
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 13 taggcagtgtagttagctgattg 35
>RF00456;mir-34;AAWZ01034188.1/3307-3229 28377:Anolis carolinensis
(green anole)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
