miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
Length = 80
Score = 157 bits (79), Expect = 3e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 2 tttcatccgtgggtggggatttgttgcattacttgtggtgtgtataaagtattgcacttg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcatccgtgggtggggatttgttgcattacttgtggtgtgtataaagtattgcacttg 60
Query: 62 tcccggcctgtggaagaaa 80
|||||||||||||||||||
Sbjct: 61 tcccggcctgtggaagaaa 79
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 3 ttcatccgtgggtggggatttgttgcattacttgtggtgtgtataaagtattgcacttgt 62
||||||| ||||||||||||||||||| |||||||| | | | |||||||||||||||||
Sbjct: 2 ttcatccatgggtggggatttgttgcactacttgtgttatatgtaaagtattgcacttgt 61
Query: 63 cccggcctgtggaagaaa 80
||||||||||||||||||
Sbjct: 62 cccggcctgtggaagaaa 79
>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 3 ttcatccgtgggtggggatttgttgcattacttgtggtgtgtataaagtattgcacttgt 62
||||||| |||||||||||| | ||||||||||||| ||| | |||||||||||||||
Sbjct: 2 ttcatccctgggtggggattgggtgcattacttgtgtcctgtgtgaagtattgcacttgt 61
Query: 63 cccggcctgtggaagaaa 80
||||||||||||||||||
Sbjct: 62 cccggcctgtggaagaaa 79
>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
Length = 81
Score = 85.7 bits (43), Expect = 8e-17
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 11 tgggtggggatttgttgcattacttgtgg-tgtgtataaagtattgcacttgtcccggcc 69
||||||||||||||||||||||||||| | ||| | || |||||||||||||||||||||
Sbjct: 10 tgggtggggatttgttgcattacttgtagctgtatgtagagtattgcacttgtcccggcc 69
Query: 70 tgtggaagaaa 80
|||||| ||||
Sbjct: 70 tgtggaggaaa 80
>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
mouse)
Length = 80
Score = 79.8 bits (40), Expect = 5e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 13 ggtggggatttgttgcattacttgtggtgtgtataaagtattgcacttgtcccggcctgt 72
|||||||||| || |||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 12 ggtggggattggtggcattacttgtgttagatataaagtattgcacttgtcccggcctga 71
Query: 73 ggaagaaa 80
||||||||
Sbjct: 72 ggaagaaa 79
>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/73 (90%), Gaps = 4/73 (5%)
Strand = Plus / Plus
Query: 12 gggtggggatttgttgcattacttg---tggtgtgtataa-agtattgcacttgtcccgg 67
||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttgatcttgtgtctataagagtattgcacttgtcccgg 70
Query: 68 cctgtggaagaaa 80
|||||||| ||||
Sbjct: 71 cctgtggaggaaa 83
>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
(chimpanzee)
Length = 79
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 3 ttcatccgtgggtggggatttgttgcattacttgtggtgtgtataaagtattgcacttgt 62
||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 2 ttcatccctgggtggggatttgttgcattacttgtgttccaca-aaagtattgcacttgt 60
Query: 63 cccggcctgtg 73
|||||||||||
Sbjct: 61 cccggcctgtg 71
>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
cuniculus (rabbit)
Length = 81
Score = 77.8 bits (39), Expect = 2e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 3 ttcatccgtgggtggggatttgttgcattacttgtggtgtgta-taaagtattgcacttg 61
|||||||| ||||||||||||| |||||||||||| | | | ||||||||||||||||
Sbjct: 2 ttcatccgctggtggggatttgtcgcattacttgtgttctatggtaaagtattgcacttg 61
Query: 62 tcccggcctgtggaagaaa 80
|||||||||||||| ||||
Sbjct: 62 tcccggcctgtggaggaaa 80
>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 84
Score = 67.9 bits (34), Expect = 2e-11
Identities = 66/73 (90%), Gaps = 4/73 (5%)
Strand = Plus / Plus
Query: 12 gggtggggatttgttgcattacttg-tggtgtg--tataa-agtattgcacttgtcccgg 67
||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||
Sbjct: 11 gggtggggatttgttgcattacttgatcatgtgactataagagtattgcacttgtcccgg 70
Query: 68 cctgtggaagaaa 80
|||||||| ||||
Sbjct: 71 cctgtggaggaaa 83
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 65.9 bits (33), Expect = 7e-11
Identities = 69/80 (86%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 3 ttcatccgtgggtggggatttgttgcattacttg--tggtgtgtataaagtattgcactt 60
|||||| ||||||||||||| | ||||||||||| | | | |||| ||||||||||||
Sbjct: 2 ttcatctgtgggtggggattgggtgcattacttgcattttatatatatagtattgcactt 61
Query: 61 gtcccggcctgtggaagaaa 80
|||||||||| |||||||||
Sbjct: 62 gtcccggcctatggaagaaa 81
>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 56.0 bits (28), Expect = 7e-08
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 11 tgggtggggatttgttgcattacttgtggtgtgtataaa--gtattgcacttgtcccggc 68
||||| ||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct: 10 tgggttgggatttgttgcattacttgtgggttccctgaacagtattgcacttgtcccggc 69
Query: 69 ctgtgga 75
|||||||
Sbjct: 70 ctgtgga 76
>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
(zebrafish)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 aagtattgcacttgtcccggcctgtg 73
||||||||||||||||||||||||||
Sbjct: 43 aagtattgcacttgtcccggcctgtg 68
>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 gtattgcacttgtcccggcctgtgga 75
||||||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgtgga 72
>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 gtattgcacttgtcccggcctgtg 73
||||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgtg 69
>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
mouse)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtattgcacttgtcccggcctgt 72
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
(American pika)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtattgcacttgtcccggcctgt 72
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
(chicken)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtattgcacttgtcccggcctgt 72
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
(zebrafish)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtattgcacttgtcccggcctgt 72
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtattgcacttgtcccggcctgt 72
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtattgcacttgtcccggcctgt 72
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtattgcacttgtcccggcctgt 72
|||||||||||||||||||||||
Sbjct: 48 gtattgcacttgtcccggcctgt 70
>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gtattgcacttgtcccggcctgt 72
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;ABEP02031049.1/2682-2605 7739:Branchiostoma
floridae (Florida lancelet)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 agtattgcacttgtcccggcct 70
||||||||||||||||||||||
Sbjct: 46 agtattgcacttgtcccggcct 67
