miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 147 bits (74), Expect = 2e-35
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 3 gtgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagataac 65
Query: 63 tatacaacttactacttt 80
|||||||| |||||||||
Sbjct: 66 tatacaacctactacttt 83
>RF00027;let-7;ABVD01531403.1/405-317 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 89
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagata 60
||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||
Sbjct: 4 gggtgaggtagtaagttgtattgttatgggatagggattttaggccccaattggaagata 63
Query: 61 actatacaacttactacttt 80
|| |||||||||||||||||
Sbjct: 64 accatacaacttactacttt 83
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagata 60
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 4 gggtgaggtagtaagttgtattgttgctgggtagagattttaggccccaattagaagata 63
Query: 61 actatacaacttactacttt 80
|||||||||| |||||||||
Sbjct: 64 actatacaacctactacttt 83
>RF00027;let-7;AAPE01289140.1/8994-8905 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 117 bits (59), Expect = 2e-26
Identities = 78/82 (95%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 1 gggtgaggtagtaagttgtattgttgtg--gggtagggattttaggccccaattagaaga 58
|||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct: 4 gggtgaggtagtaagttgtattgttgtgtggggtagggatttaaggccccaat-agaaga 62
Query: 59 taactatacaacttactacttt 80
||||||||||||||||||||||
Sbjct: 63 taactatacaacttactacttt 84
>RF00027;let-7;AAWZ01028874.1/2915-3002 28377:Anolis carolinensis
(green anole)
Length = 88
Score = 103 bits (52), Expect = 3e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 gggtgaggtagtaagttgtattgttgtggggtagggattttaggccccaattagaagata 60
|||||||||||||||||||||||||||||||||||||||| | ||| ||| || |||||
Sbjct: 4 gggtgaggtagtaagttgtattgttgtggggtagggatttgtgccccaaatcag-agata 62
Query: 61 actatacaacttactacttt 80
||||||||||||||||||||
Sbjct: 63 actatacaacttactacttt 82
>RF00027;let-7;AAPN01318002.1/36628-36717 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 87.7 bits (44), Expect = 2e-17
Identities = 72/79 (91%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 4 tgaggtagtaagttgtattgttgtggggtagggatt--ttaggccccaattagaagataa 61
|||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 7 tgaggtagtaagttgtattgttgtggggtagggatttcttttgccccaattag-cgataa 65
Query: 62 ctatacaacttactacttt 80
|||||||| ||||||||||
Sbjct: 66 ctatacaatttactacttt 84
>RF00027;let-7;CAAB01003893.1/10262-10170 31033:Takifugu rubripes
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 ggtgaggtagtaagttgtattgttgtgggg 31
|||||||||||||||||| |||||||||||
Sbjct: 5 ggtgaggtagtaagttgtgttgttgtgggg 34
>RF00027;let-7;AANH01002616.1/64077-64170 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 94
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 ggtgaggtagtaagttgtattgttgtggggt 32
|||||||||||| ||||| ||||||||||||
Sbjct: 5 ggtgaggtagtatgttgtgttgttgtggggt 35
>RF00027;let-7;BX664745.13/143600-143510 7955:Danio rerio
(zebrafish)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 ggtgaggtagtaagttgtattgttgt 27
|||||||||||||||||| |||||||
Sbjct: 5 ggtgaggtagtaagttgtgttgttgt 30
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 ggtgaggtagtaagttgtattgttgt 27
|||||||||||||||||| |||||||
Sbjct: 5 ggtgaggtagtaagttgtgttgttgt 30
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 ggtgaggtagtaagttgtattgttgt 27
|||||||||||||||||| |||||||
Sbjct: 5 ggtgaggtagtaagttgtgttgttgt 30
