miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 143 bits (72), Expect = 4e-34
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 5 ctgccctcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacag 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ctgccttcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacag 62
Query: 65 ggctatgaaggcactg 80
||||||||||||||||
Sbjct: 63 ggctatgaaggcactg 78
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 119 bits (60), Expect = 6e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 5 ctgccctcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacag 64
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3 ctgccctcggcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacag 62
Query: 65 ggctatga 72
||||||||
Sbjct: 63 ggctatga 70
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 89.7 bits (45), Expect = 5e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 6 tgccctcggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagg 65
|||| |||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 4 tgccttcggcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagg 63
Query: 66 gctatgaaggcac 78
|||||||||||||
Sbjct: 64 gctatgaaggcac 76
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 87.7 bits (44), Expect = 2e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaa 73
||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaa 73
||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 17 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 72
||||||| |||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 15 tctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 17 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaaggc 76
||||||| |||||||||||| || | | ||||||||||||||||||||||||||||||||
Sbjct: 15 tctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggctatgaaggc 74
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 70
|||||||||||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaa 73
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 69.9 bits (35), Expect = 5e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 26 tgctgccttgttgcatatggatcaagcagcattgtacagggctatgaaggc 76
||||||||||| || | | ||||||||||||||||||||||||||||||||
Sbjct: 24 tgctgccttgtggcgtcttgatcaagcagcattgtacagggctatgaaggc 74
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 13 ggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 70
||||||||||||||| |||||||| || | ||||||||||||||||||||||||||
Sbjct: 11 ggcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 65.9 bits (33), Expect = 7e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 70
|||||||||||||| |||||||| |||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 63.9 bits (32), Expect = 3e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 17 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 72
|||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 15 tctttacagtgctgccttgtctgatcaggttcaagcagcattgtacagggctatga 70
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 46 atcaagcagcattgtacagggctatgaaggcac 78
|||||||||||||||||||||||||||| ||||
Sbjct: 44 atcaagcagcattgtacagggctatgaaagcac 76
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 56.0 bits (28), Expect = 7e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 13 ggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggct 68
||||||| ||||||| |||||||| || | ||||||||||||||||||||||||
Sbjct: 11 ggcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 66
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 tcaagcagcattgtacagggctatga 72
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
