miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00670;mir-105;AAEX02003804.1/918-997 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 135 bits (68), Expect = 9e-32
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactccttggtggctgcttatgcaccacggatgtttg 60
|||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 1 tgtgcatcatggtcaaatgctcagactccttggtggctgcttatgcaccatgaatgtttg 60
Query: 61 agcatgtgctatggtgtcta 80
||||||||||||||||||||
Sbjct: 61 agcatgtgctatggtgtcta 80
>RF00670;mir-105;ABRO01195452.1/9888-9808 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 121 bits (61), Expect = 1e-27
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactcct-tggtggctgcttatgcaccacggatgttt 59
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
Query: 60 gagcatgtgctatggtgtcta 80
|||||| ||| ||||||||||
Sbjct: 61 gagcatatgccatggtgtcta 81
>RF00670;mir-105;AANN01683306.1/2545-2466 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 8 cgtggtcaaatgctcagactccttggtggctgcttatgcaccacggatgtttgagcatgt 67
||||||||||||||||| |||| |||| | || ||||||||||||||||||||||||| |
Sbjct: 8 cgtggtcaaatgctcaggctccgtggtagttgattatgcaccacggatgtttgagcattt 67
Query: 68 gctatggtgtcta 80
| ||||||||||
Sbjct: 68 acaatggtgtcta 80
>RF00670;mir-105;AAIY01029761.1/2576-2497 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 81.8 bits (41), Expect = 1e-15
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactcct-tggtggctgcttatgcaccacggatgttt 59
||||||| |||||||||||||||||||||| | ||||||| || ||||||| |||| |||
Sbjct: 1 tgtgcattgtggtcaaatgctcagactcctgttgtggctgtttgtgcaccatggat-ttt 59
Query: 60 gagcatgtgctatggtgtcta 80
||||||||||||||| |||||
Sbjct: 60 gagcatgtgctatggcgtcta 80
>RF00670;mir-105;AABR04012381.1/35187-35107 10116:Rattus
norvegicus (Norway rat)
Length = 81
Score = 75.8 bits (38), Expect = 7e-14
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccacggatgtttgagcatgtgctatggtgtcta 80
||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct: 32 tggtggctgcttatgtatcacggatgtttgagcatgtgctatggtatcta 81
>RF00670;mir-105;CAAA01059274.1/4642-4722 10090:Mus musculus
(house mouse)
Length = 81
Score = 73.8 bits (37), Expect = 3e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccacggatgtttgagcatgtgctatggt 75
|||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 32 tggtggctgcttatgcaccacgaatgcttgagcatgtgctatggt 76
>RF00670;mir-105;AANG01759982.1/244-164 9685:Felis catus (domestic
cat)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccacggatgtttga 61
|||||||||||||||||||| ||||||||||
Sbjct: 32 tggtggctgcttatgcaccatggatgtttga 62
>RF00670;mir-105;AALT01106831.1/106-184 42254:Sorex araneus
(European shrew)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 40 cttatgcaccacggatgtttgagcatgtgctatggtgtcta 80
|||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 39 cttatgcaccgtggatgcttgagcatgtgctattgtgtcta 79
>RF00670;mir-105;ABRO01195452.1/8720-8641 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccacggatgtttgagcatg 66
|||||||||||||||||||| |||||| ||| ||||
Sbjct: 31 tggtggctgcttatgcaccatggatgtgtgaccatg 66
>RF00670;mir-105;AAEX02003804.1/4224-4304 9615:Canis lupus
familiaris (dog)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccacggatgtttga 61
||||||||||| ||||||| |||||||||||
Sbjct: 32 tggtggctgctcatgcacctcggatgtttga 62
>RF00670;mir-105;ABRT010308690.1/936-856 9478:Tarsius syrichta
(Philippine tarsier)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccacggatgtttg 60
|||||||||||||||||||| | |||||||
Sbjct: 33 tggtggctgcttatgcaccatgaatgtttg 62
