miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00701;mir-126;ABRQ01610658.1/2102-2030 9813:Procavia capensis
(cape rock hyrax)
Length = 73
Score = 121 bits (61), Expect = 1e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 cgacgggacattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 cgacggggcattattacttttggtacgcgctgtgacacgtcaaactcgtaccgtgagtaa 60
Query: 61 taatgcgctgtcg 73
||||||| |||||
Sbjct: 61 taatgcgttgtcg 73
>RF00701;mir-126;AAWZ01045019.1/473-401 28377:Anolis carolinensis
(green anole)
Length = 73
Score = 115 bits (58), Expect = 8e-26
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgccacttcaaactcgtaccgtgagtaataatgcgc 68
Query: 69 tg 70
||
Sbjct: 69 tg 70
>RF00701;mir-126;AAVX01058805.1/2145-2073 7868:Callorhinchus milii
(ghost shark)
Length = 73
Score = 115 bits (58), Expect = 8e-26
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;AAFR03005634.1/12031-12103 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 111 bits (56), Expect = 1e-24
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 68
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacatcaaactcgtaccgtgagtaataatgcgc 68
>RF00701;mir-126;AAPN01325297.1/2349-2421 9258:Ornithorhynchus
anatinus (platypus)
Length = 73
Score = 109 bits (55), Expect = 5e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 67
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacgcttcaaactcgtaccgtgagtaataatgcg 67
>RF00701;mir-126;AAQR01724391.1/772-699 30611:Otolemur garnettii
(small-eared galago)
Length = 74
Score = 103 bits (52), Expect = 3e-22
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 gacgggacattattacttttggtacgcgctgtgacacttcaaactcgta-ccgtgagtaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 2 gacgggacattattacttttggtacgcgctgtgacacttcaacctcgtatgggtgagtaa 61
Query: 61 taatgcgctgtc 72
||||||||||||
Sbjct: 62 taatgcgctgtc 73
>RF00701;mir-126;BAAE01255215.1/350-278 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 75.8 bits (38), Expect = 7e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;EU221177.1/65651-65724 8030:Salmo salar (Atlantic
salmon)
Length = 74
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 9 cattattacttttggtacgcgctgtgacact-tcaaactcgtaccgtgagtaataatgcg 67
||||||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaataatgca 68
Query: 68 ctgt 71
||||
Sbjct: 69 ctgt 72
