miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 105 bits (53), Expect = 8e-23
Identities = 62/64 (96%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 13 ttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccccaaaaagc 72
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 16 ttttgcggtctgggcttgctgtacataactcaatagccggaagcccttaccc--aaaagc 73
Query: 73 attc 76
||||
Sbjct: 74 attc 77
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
Length = 91
Score = 105 bits (53), Expect = 8e-23
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 cttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagccct 59
||||| |||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 64
Query: 60 taccccaaaaagcattcgcgg 80
|||||||||||||||||||||
Sbjct: 65 taccccaaaaagcattcgcgg 85
>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
(zebrafish)
Length = 91
Score = 79.8 bits (40), Expect = 5e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 2 ttcgtgaatctttttgcggtctgggcttgctgtacataactcaatagc-cggaagccctt 60
|||| |||||||||||||||||||||||||||| ||||| | |||| ||||||||||
Sbjct: 6 ttcgcgaatctttttgcggtctgggcttgctgttcataagtatctagctgggaagccctt 65
Query: 61 accccaaaaagcattcgcgg 80
||||||||||||||| ||||
Sbjct: 66 accccaaaaagcatttgcgg 85
>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 63.9 bits (32), Expect = 3e-10
Identities = 64/73 (87%), Gaps = 5/73 (6%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgtacataactcaatagcc--ggaagcccttaccc 64
|||||||||||||||||||||||||||| ||| ||| || | ||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgtgcat---tcattaatctgggaagcccttaccc 67
Query: 65 caaaaagcattcg 77
|||||||||||||
Sbjct: 68 caaaaagcattcg 80
>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio
(zebrafish)
Length = 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 66/76 (86%), Gaps = 5/76 (6%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgtacataac--tcaatagccggaagcccttaccc 64
|||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgttctcaactatcaat---gggaagcccttaccc 67
Query: 65 caaaaagcattcgcgg 80
||||||||||| ||||
Sbjct: 68 caaaaagcatttgcgg 83
>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 68
||||||||||||||||||||||||| | ||| | ||||| ||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttcctaaggaagtagccaggaagcccttaccccaaa 73
Query: 69 aag 71
|||
Sbjct: 74 aag 76
>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 60.0 bits (30), Expect = 4e-09
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgtacataactcaatagccggaagcccttacccca 66
|||||||||||||||||||||||||||| |||| | | | ||||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgtgcatacacgact--ctggaagcccttacccca 68
Query: 67 aaaagcatt 75
|||||||||
Sbjct: 69 aaaagcatt 77
>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctg-tacataactcaatag-ccggaagcccttacccca 66
||||||||||||||||||||||||| | | ||| ||| ||| | ||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttacccca 72
Query: 67 aaaag 71
|||||
Sbjct: 73 aaaag 77
>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
(ghost shark)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 tgaatctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||||||
Sbjct: 10 tgaatctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
nigroviridis
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 56.0 bits (28), Expect = 7e-08
Identities = 58/66 (87%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttaccccaaa 68
||||||||||||||||||||||||| || | |||| || ||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt---caagttaatatccaggaagcccttaccccaaa 70
Query: 69 aagcat 74
||||||
Sbjct: 71 aagcat 76
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 aatctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||||
Sbjct: 12 aatctttttgcggtctgggcttgctgt 38
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 ggaagcccttaccccaaaaagcattcgcgg 80
||||||||||||||||||||||||| ||||
Sbjct: 56 ggaagcccttaccccaaaaagcatttgcgg 85
>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
(northern tree shrew)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 78 atctttttgcggtctgggcttgctgt 53
>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 11 atctttttgcggtctgggcttgctgt 36
>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
(zebrafish)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 66
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 72
Query: 67 aaaag 71
|||||
Sbjct: 73 aaaag 77
>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
rubripes
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgta 35
||||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgta 39
>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
(zebrafish)
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
Length = 93
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 aatctttttgcggtctgggcttgct 32
|||||||||||||||||||||||||
Sbjct: 13 aatctttttgcggtctgggcttgct 37
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 ggaagcccttaccccaaaaagcatt 75
|||||||||||||||||||||||||
Sbjct: 58 ggaagcccttaccccaaaaagcatt 82
>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 ggaagcccttaccccaaaaagcat 74
||||||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaagcat 76
>RF00486;mir-129;AAWZ01021483.1/628-534 28377:Anolis carolinensis
(green anole)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 aagcccttaccccaaaaagcat 74
||||||||||||||||||||||
Sbjct: 62 aagcccttaccccaaaaagcat 83
