miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
(northern tree shrew)
Length = 88
Score = 149 bits (75), Expect = 6e-36
Identities = 78/79 (98%)
Strand = Plus / Minus
Query: 2 cctttggatctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagccct 61
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 85 cctttggatctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagccct 26
Query: 62 taccccaaaaagtatctgc 80
|||||||||||||||||||
Sbjct: 25 taccccaaaaagtatctgc 7
>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 141 bits (71), Expect = 2e-33
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 2 cctttggatctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagccct 61
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4 ccttcggatctttttgcggtctgggcttgctgttcctctcagcagtagtcaggaagccct 63
Query: 62 taccccaaaaagtatctgcggga 84
|||||||||||||||||||||||
Sbjct: 64 taccccaaaaagtatctgcggga 86
>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 141 bits (71), Expect = 2e-33
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 2 cctttggatctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagccct 61
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6 cctttgggtctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagccct 65
Query: 62 taccccaaaaagtatctgcggga 84
|||||||||||||||| ||||||
Sbjct: 66 taccccaaaaagtatccgcggga 88
>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 113 bits (57), Expect = 4e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2 cctttggatctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagccct 61
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6 cctttggatctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagccct 65
Query: 62 taccccaaaaagtatct 78
|||||||||||||||||
Sbjct: 66 taccccaaaaagtatct 82
>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 101 bits (51), Expect = 1e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 7 ggatctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttaccc 66
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 11 ggatctttttgcggtctgggcttgctgttcctccagtcagcagtcaggaagcccttaccc 70
Query: 67 caaaaagtatctgcg 81
|||||||||| ||||
Sbjct: 71 caaaaagtatttgcg 85
>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
(zebrafish)
Length = 92
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttaccccaa 69
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 73
Query: 70 aaagtatctgc 80
|||||||||||
Sbjct: 74 aaagtatctgc 84
>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
(ghost shark)
Length = 92
Score = 89.7 bits (45), Expect = 5e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttacccca 68
|||||||||||||||||||||||||||||| | | || | |||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttcctttgtccaacactcaggaagcccttacccca 72
Query: 69 aaaagtatctgcg 81
|||||||| ||||
Sbjct: 73 aaaagtatttgcg 85
>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
(zebrafish)
Length = 92
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttaccccaa 69
||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttccttaaatcaccagtcaggaagcccttaccccaa 73
Query: 70 aaagtatctg 79
||||||||||
Sbjct: 74 aaagtatctg 83
>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttaccccaa 69
||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttcctaagga-agtagccaggaagcccttaccccaa 72
Query: 70 aaagtatct 78
|||||||||
Sbjct: 73 aaagtatct 81
>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio
(zebrafish)
Length = 89
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgttc 36
||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttc 40
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagtatctgcgg 82
||||||||||||||||||||| || |||||
Sbjct: 54 ggaagcccttaccccaaaaagcatttgcgg 83
>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
(zebrafish)
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgttc 36
||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttc 40
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagtatctgcgg 82
||||||||||||||||||||| || |||||
Sbjct: 56 ggaagcccttaccccaaaaagcatttgcgg 85
>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
nigroviridis
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgttc 36
||||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgtt 35
|||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgtt 39
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagtatctgcgg 82
||||||||||||||||||||| || |||||
Sbjct: 56 ggaagcccttaccccaaaaagcatttgcgg 85
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
rubripes
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 caggaagcccttaccccaaaaagtatctgc 80
||||||||||||||||||||||| ||||||
Sbjct: 50 caggaagcccttaccccaaaaagcatctgc 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 caggaagcccttaccccaaaaagtatctgc 80
||||||||||||||||||||||| ||||||
Sbjct: 51 caggaagcccttaccccaaaaagcatctgc 80
>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 caggaagcccttaccccaaaaagtatctgc 80
||||||||||||||||||||||| ||||||
Sbjct: 51 caggaagcccttaccccaaaaagcatctgc 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgct 32
||||||||||||||||||||||||
Sbjct: 14 atctttttgcggtctgggcttgct 37
>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttttgcggtctgggcttgctgt 34
||||||||||||||||||||||
Sbjct: 16 ttttgcggtctgggcttgctgt 37
