miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 133 bits (67), Expect = 4e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5 ggccagagctcttttcacattgtgctactgtctgcacctgtcactagcagtgcaatgtta 64
Query: 63 aaagggcattggcca 77
|||||||||||||||
Sbjct: 65 aaagggcattggcca 79
>RF00258;mir-130;AAPN01026753.1/160-77 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 91.7 bits (46), Expect = 1e-18
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgt 60
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 5 ggccggagctcttttcacattgtgctactgtctgcgcccgtcactagcagtgcaatgt 62
>RF00258;mir-130;AL928914.15/23540-23459 10090:Mus musculus (house
mouse)
Length = 82
Score = 75.8 bits (38), Expect = 7e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 3 ggccggagctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgtta 62
||||||||||||||||||||||||||||||||| || | | | |||||||||||||||
Sbjct: 5 ggccggagctcttttcacattgtgctactgtct-aacgtgtaccgagcagtgcaatgtta 63
Query: 63 aaagggcattggcc 76
||||||||| ||||
Sbjct: 64 aaagggcatcggcc 77
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 65.9 bits (33), Expect = 7e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 10 gctcttttcacattgtgctactgtctgcacctatcactagcagtgcaatgttaaaagggc 69
||||||||||||||||||| ||||||| || | | ||||||||||||||||||||||
Sbjct: 12 gctcttttcacattgtgcttctgtctgtgcccgacccaagcagtgcaatgttaaaagggc 71
Query: 70 attgg 74
|||||
Sbjct: 72 attgg 76
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggcca 80
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggcca 80
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcattggcca 4
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
guttata
Length = 82
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggcca 79
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcattggcca 76
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
(zebrafish)
Length = 84
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||||||||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggcca 80
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 gcagtgcaatgttaaaagggcattggcc 76
||||||||||||||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcattggcc 75
>RF00258;mir-130;AANH01000530.1/26463-26380 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcc 76
|||||||||| ||||||||||||||||||
Sbjct: 51 agcagtgcaacgttaaaagggcattggcc 79
>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
(chicken)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
(zebrafish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
(zebrafish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 45 agcagtgcaatattaaaagggcattggc 72
>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;AAVX01105962.1/740-661 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 48 agcagtgcaatattaaaagggcattggc 75
>RF00258;mir-130;BAAE01186101.1/50-128 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 agcagtgcaatgttaaaagggcattggcca 77
||||||||||| |||||||||||| |||||
Sbjct: 47 agcagtgcaattttaaaagggcatcggcca 76
