miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;ABRQ01460659.1/5464-5553 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 165 bits (83), Expect = 1e-40
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 1 aggcctcgctgttctctatggctttttattcctatgtgattctactgctcattcatatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 aggcctcgctgttctctatggctttttattcctatgtgattctactgctcactcatatag 60
Query: 61 ggattggagccgtggcgcacggcgggg 87
|||||||||||||||||||||||||||
Sbjct: 61 ggattggagccgtggcgcacggcgggg 87
>RF00246;mir-135;AAPN01299361.1/1140-1229 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 105 bits (53), Expect = 9e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 2 ggcctcgctgttctctatggctttttattcctatgtgattctactgctcattcatatagg 61
|||| |||||| ||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 2 ggccccgctgtgctctatggctttttattcctatgtgatcctgctgctcactcatatagg 61
Query: 62 gattggagccgtg 74
|||||||||||||
Sbjct: 62 gattggagccgtg 74
>RF00246;mir-135;AAIY01659495.1/471-383 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 89
Score = 93.7 bits (47), Expect = 4e-19
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 aggcctcgctgttctctatggctttttattcctatgtgattctactgctcattcatatag 60
||||||||||| |||||||||||||| ||||||||||||||||| || ||| ||| ||||
Sbjct: 1 aggcctcgctgctctctatggcttttcattcctatgtgattcta-tggtcactcacatag 59
Query: 61 ggattggagccgtggcgcacggcgggg 87
|||| |||||||||||| |||| ||||
Sbjct: 60 ggatgggagccgtggcggacggtgggg 86
>RF00246;mir-135;ABQF01031688.1/17601-17511 59729:Taeniopygia
guttata
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgattctactgctca-ttcatatagggattggagccgtg 74
||||||||||||||||||||||||| ||| | || ||||||||||||||| |||||||
Sbjct: 17 tatggctttttattcctatgtgattatacatcccacttcatatagggattgaagccgtg 75
>RF00246;mir-135;AADN02056441.1/1410-1500 9031:Gallus gallus
(chicken)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 gcctcgctgttctctatggctttttattcctatgtgattctac-tgctcattcatatagg 61
||||| |||| || ||||||||||||||||||||||||| ||| | | ||||||||||
Sbjct: 3 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 62
Query: 62 gattggagccgtg 74
||||| |||||||
Sbjct: 63 gattgaagccgtg 75
>RF00246;mir-135;AAWZ01006677.1/107967-108057 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 tctatggctttttattcctatgtgatt 41
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
(chicken)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 tctatggctttttattcctatgtgatt 41
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>RF00246;mir-135;AAVX01218173.1/698-790 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 ctctatggctttttattcctatgtgat 40
|||||||||||||||||||||||||||
Sbjct: 14 ctctatggctttttattcctatgtgat 40
>RF00246;mir-135;AAPN01269426.1/3344-3254 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 ctatggctttttattcctatgtgatt 41
||||||||||||||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgatt 41
>RF00246;mir-135;AANH01001634.1/39339-39250 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 ctatggctttttattcctatgtgat 40
|||||||||||||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgat 40
>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgatt 41
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;AADN02005966.1/161306-161395 9031:Gallus gallus
(chicken)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgat 40
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;CAAB01002540.1/26990-26899 31033:Takifugu
rubripes
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgat 40
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AANH01002735.1/65484-65395 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgattctactgctcattcatatagggat 64
||||||||||||||||||| ||| | ||||| | |||||||||||||
Sbjct: 17 tatggctttttattcctatctgactgtactgatggttcatatagggat 64
>RF00246;mir-135;BAAE01018119.1/1524-1435 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtgat 40
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;CR381618.15/176832-176743 7955:Danio rerio
(zebrafish)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tatggctttttattcctatgtga 39
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
>RF00246;mir-135;AAPE01018078.1/3690-3601 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctatggctttttattcctatgtgatt 41
||||||||||| ||||||||||||||
Sbjct: 16 ctatggcttttcattcctatgtgatt 41
>RF00246;mir-135;AAGU02576112.1/3465-3375 9785:Loxodonta africana
(African savanna elephant)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctatggctttttattcctatgtgatt 41
||||||||||| ||||||||||||||
Sbjct: 16 ctatggcttttcattcctatgtgatt 41
