miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00426;SCARNA15;ABDC01642996.1/97-188 30608:Microcebus murinus
(gray mouse lemur)
Length = 92
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 20 cctaaatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactta 79
Query: 61 tctaccaacag 71
|||||||||||
Sbjct: 80 tctaccaacag 90
>RF00426;SCARNA15;ABDC01323625.1/886-758 30608:Microcebus murinus
(gray mouse lemur)
Length = 129
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 57 cctaaatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactta 116
Query: 61 tctaccaacag 71
|||||||||||
Sbjct: 117 tctaccaacag 127
>RF00426;SCARNA15;ABDC01414620.1/1491-1629 30608:Microcebus murinus
(gray mouse lemur)
Length = 139
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 67 cctaaatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactta 126
Query: 61 tctaccaacag 71
|||||||||||
Sbjct: 127 tctaccaacag 137
>RF00426;SCARNA15;AAGV020357757.1/1133-1034 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 100
Score = 105 bits (53), Expect = 8e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 28 cctatatgaaaaggtagatagaacaggtcttgtttgcaaaatatattcaagacctactta 87
Query: 61 tctaccaacagca 73
|||||||||||||
Sbjct: 88 tctaccaacagca 100
>RF00426;SCARNA15;AAGU02340666.1/908-1033 9785:Loxodonta africana
(African savanna elephant)
Length = 126
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
|||| ||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 54 cctagatgaaaaggtagacagaacaggtcttgtttgcaaaataaattcaagacctactta 113
Query: 61 tctaccaacag 71
|||||||||||
Sbjct: 114 tctaccaacag 124
>RF00426;SCARNA15;AAPE01262062.1/297-424 59463:Myotis lucifugus
(little brown bat)
Length = 128
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 2 ctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctactttt 61
|||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||| |
Sbjct: 57 ctaaattaaaaggtggatagaacaggtcttgtttgcaaaataaattcaagacctacttat 116
Query: 62 ctaccaacag 71
|| |||||||
Sbjct: 117 cttccaacag 126
>RF00426;SCARNA15;ABRT010960031.1/1022-896 9478:Tarsius syrichta
(Philippine tarsier)
Length = 127
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 4 aaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttct 63
|||||||| | |||||||||||| |||||||||||| || |||||||||||||||| |||
Sbjct: 58 aaatgaaatgttagatagaacagatcttgtttgcaaaataaattcaagacctacttatct 117
Query: 64 accaacagca 73
||||||||||
Sbjct: 118 accaacagca 127
>RF00426;SCARNA15;AAGW01181484.1/4968-4842 9986:Oryctolagus
cuniculus (rabbit)
Length = 127
Score = 91.7 bits (46), Expect = 1e-18
Identities = 69/74 (93%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaa-ttcaagacctactt 59
|||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||
Sbjct: 55 cctaaatgaaaaggtagatagaacaggtcttgttcgcaa-aggaagttcaagacctactt 113
Query: 60 ttctaccaacagca 73
|||||||||||||
Sbjct: 114 atctaccaacagca 127
>RF00426;SCARNA15;AAGV020611566.1/33-113 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 81
Score = 89.7 bits (45), Expect = 5e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 9 aaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttctaccaa 68
||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
Sbjct: 17 aaaaggtagatagaacaggtcttgtttgcaaaatatattcaagacctacttatctaccca 76
Query: 69 cagca 73
|||||
Sbjct: 77 cagca 81
>RF00426;SCARNA15;CABD01010008.1/10785-10659 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 127
Score = 89.7 bits (45), Expect = 5e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
||||||||||| | |||| |||||||||||||||||||| || ||||||||||||||||
Sbjct: 55 cctaaatgaaaggatagacagaacaggtcttgtttgcaaaataaattcaagacctacttg 114
Query: 61 tctaccaacagca 73
|||||| ||||||
Sbjct: 115 tctaccgacagca 127
>RF00426;SCARNA15;AANU01259224.1/203-329 9544:Macaca mulatta (rhesus
monkey)
Length = 127
Score = 89.7 bits (45), Expect = 5e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
||||||||||||| || |||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 55 cctaaatgaaaagataaatagaacaggtcttgtttacaaaataaattcaagacctactta 114
Query: 61 tctaccaacagca 73
|||| ||||||||
Sbjct: 115 tctatcaacagca 127
>RF00426;SCARNA15;AAKN02018069.1/1858-1942 10141:Cavia porcellus
(domestic guinea pig)
Length = 85
Score = 89.7 bits (45), Expect = 5e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||
Sbjct: 13 cctaaatgaaaaggtagatagaacaggtcctgtttgcaaaagaaacccaagacctactta 72
Query: 61 tctaccaacagca 73
|||||||||||||
Sbjct: 73 tctaccaacagca 85
>RF00426;SCARNA15;AANN01732064.1/1528-1403 9365:Erinaceus europaeus
(western European hedgehog)
Length = 126
Score = 87.7 bits (44), Expect = 2e-17
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
|||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 55 cctacatgaaaaggtagatagaacaggtcttg-gtgcaagataaattcaagacctacttc 113
Query: 61 tctaccaacagc 72
||| ||||||||
Sbjct: 114 tctgccaacagc 125
>RF00426;SCARNA15;ABRT010511928.1/2990-3114 9478:Tarsius syrichta
(Philippine tarsier)
Length = 125
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 12 aggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttctaccaacag 71
||||||||| | ||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 64 aggtagatacagcaggtcttgtttgcagaatgaattcaagacctacttgtctaccaacag 123
Query: 72 ca 73
||
Sbjct: 124 ca 125
>RF00426;SCARNA15;AAGW01384269.1/1466-1381 9986:Oryctolagus
cuniculus (rabbit)
Length = 86
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
||||||||||||| ||||||||||||||||||||| ||| | ||||||| ||||||||
Sbjct: 14 cctaaatgaaaagatagatagaacaggtcttgtttacaaagtaaattcaaaacctactta 73
Query: 61 tctaccaacagca 73
||||||| |||||
Sbjct: 74 tctaccagcagca 86
>RF00426;SCARNA15;ABGA01163946.1/1947-1823 9601:Pongo abelii
(Sumatran orangutan)
Length = 125
Score = 79.8 bits (40), Expect = 5e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
||||||| ||||| ||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct: 53 cctaaattaaaagatagatagaacaggtcttgtttgcaaaataaattcaagatctactta 112
Query: 61 tcta 64
||||
Sbjct: 113 tcta 116
>RF00426;SCARNA15;AAIY01143864.1/664-778 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 115
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttt 60
||||||| ||||||||| ||||||||||||||| || | || |||||||||||||| |
Sbjct: 43 cctaaattaaaaggtaggtagaacaggtcttgtgagcgaaataaattcaagacctacata 102
Query: 61 tctaccaacagca 73
|||||||||||||
Sbjct: 103 tctaccaacagca 115
>RF00426;SCARNA15;AANN01624857.1/5804-5929 9365:Erinaceus europaeus
(western European hedgehog)
Length = 126
Score = 69.9 bits (35), Expect = 5e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 11 aaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttctaccaaca 70
|||||||||||||||||||||| | || |||| |||||||||||||||| ||| ||||||
Sbjct: 65 aaggtagatagaacaggtcttggt-gcgagataaattcaagacctacttctctgccaaca 123
Query: 71 gca 73
|||
Sbjct: 124 gca 126
>RF00426;SCARNA15;ABRT010138948.1/1817-1690 9478:Tarsius syrichta
(Philippine tarsier)
Length = 128
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 7 tgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctacttttctacc 66
||||||||||||||||||| ||||||| || || || |||||||||||||| ||||||
Sbjct: 62 tgaaaaggtagatagaacaagtcttgtatgaaaaataggttcaagacctacttatctacc 121
Query: 67 aacagca 73
|||||||
Sbjct: 122 aacagca 128
>RF00426;SCARNA15;ABRT010179799.1/88-195 9478:Tarsius syrichta
(Philippine tarsier)
Length = 108
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 16 agatagaacaggtcttgtttgcaagatgaattcaagacctacttttctaccaacagca 73
||||||||||||||||||||| || | |||||||||||||||| |||||| ||||||
Sbjct: 51 agatagaacaggtcttgtttgaaaagtaaattcaagacctacttatctacctacagca 108
>RF00426;SCARNA15;AAIY01626672.1/2150-2024 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 127
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 aaatgaaaaggtagatagaacaggtcttgt 33
||||||||||||||||||||||||||||||
Sbjct: 58 aaatgaaaaggtagatagaacaggtcttgt 87
>RF00426;SCARNA15;AAFR03044917.1/37293-37424 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 132
Score = 46.1 bits (23), Expect = 7e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctactt 59
||||||||||||||| | | ||||||| | ||| | ||||||||||||| | |||||||
Sbjct: 59 cctaaatgaaaaggtcgttggaacaggccctgtcttcaagatgaattcaggtcctactt 117
>RF00423;SCARNA4;AAFR03044917.1/37292-37424 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 133
Score = 46.1 bits (23), Expect = 7e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1 cctaaatgaaaaggtagatagaacaggtcttgtttgcaagatgaattcaagacctactt 59
||||||||||||||| | | ||||||| | ||| | ||||||||||||| | |||||||
Sbjct: 60 cctaaatgaaaaggtcgttggaacaggccctgtcttcaagatgaattcaggtcctactt 118
