miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00563;SNORA53;X77338.1/4681-4920 9913:Bos taurus (cattle)
Length = 240
Score = 167 bits (84), Expect = 4e-41
Identities = 96/100 (96%)
Strand = Plus / Plus
Query: 3 agataaatatacctgcatgttagtctttggttctggtagaaatgacatgcaattgtgctg 62
||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||
Sbjct: 141 agataaatatacctgcatgttagtcttaggttctgatagaaatgacatgcaattatgctg 200
Query: 63 ccatattttactatcaggactcgactggtgtgcggacact 102
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ccattttttactatcaggactcgactggtgtgcggacact 240
>RF00563;SNORA53;AAPE01071273.1/2051-1896 59463:Myotis lucifugus
(little brown bat)
Length = 156
Score = 125 bits (63), Expect = 1e-28
Identities = 94/103 (91%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 1 tgagataaatatacctgcatgttagtctttggttctggtagaaatgacatgcaattgtgc 60
||||||||||||||||||||||||||||| ||||||| || ||||| ||||| |||||||
Sbjct: 54 tgagataaatatacctgcatgttagtcttaggttctgatacaaatggcatgccattgtgc 113
Query: 61 tgccatattt-tactatcaggactcgactggtgtgcggacact 102
|||||| ||| |||| |||||||| ||||||||||||||||||
Sbjct: 114 tgccatttttgtactgtcaggacttgactggtgtgcggacact 156
>RF00563;SNORA53;AALT01381857.1/4938-5172 42254:Sorex araneus
(European shrew)
Length = 235
Score = 115 bits (58), Expect = 1e-25
Identities = 91/102 (89%)
Strand = Plus / Plus
Query: 1 tgagataaatatacctgcatgttagtctttggttctggtagaaatgacatgcaattgtgc 60
|||||| |||||||||||||||||||||| |||||| |||||||||||||||||| |||
Sbjct: 134 tgagatcaatatacctgcatgttagtcttaagttctgatagaaatgacatgcaattatgc 193
Query: 61 tgccatattttactatcaggactcgactggtgtgcggacact 102
||||| | || ||||||||||| ||||||||||| ||||||
Sbjct: 194 tgccaaacttgactatcaggacgtgactggtgtgcagacact 235
>RF00563;SNORA53;AALT01301038.1/2128-2374 42254:Sorex araneus
(European shrew)
Length = 247
Score = 95.6 bits (48), Expect = 1e-19
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 15 ctgcatgttagtctttggttctggtagaaatgacatgcaattgtgctgccatattttact 74
||||| ||||||||| ||||||| |||||||||||||||||| ||||||||| || |||
Sbjct: 160 ctgcaagttagtcttaggttctgatagaaatgacatgcaattatgctgccattcttgact 219
Query: 75 atcaggactcgactggtgtgcggacact 102
|||||||| ||||||||||| ||||||
Sbjct: 220 atcaggacatgactggtgtgcagacact 247
>RF00563;SNORA53;AALT01462294.1/2435-2673 42254:Sorex araneus
(European shrew)
Length = 239
Score = 91.7 bits (46), Expect = 2e-18
Identities = 88/102 (86%)
Strand = Plus / Plus
Query: 1 tgagataaatatacctgcatgttagtctttggttctggtagaaatgacatgcaattgtgc 60
|||||| |||||||||||||||||||||| | ||| |||||||||||||||||| |||
Sbjct: 138 tgagatcaatatacctgcatgttagtcttaaatcctgatagaaatgacatgcaattatgc 197
Query: 61 tgccatattttactatcaggactcgactggtgtgcggacact 102
|||||| || ||||||||||| ||||| |||| |||||||
Sbjct: 198 tgccattcttgactatcaggacctgactgttgtgtggacact 239
>RF00563;SNORA53;ABRT010111975.1/1701-1851 9478:Tarsius syrichta
(Philippine tarsier)
Length = 151
Score = 91.7 bits (46), Expect = 2e-18
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 5 ataaatatacctgcatgttagtctttggttctggtagaaatgacatgcaattgtgctgcc 64
|||||||||||||||| | ||||| ||||||| ||||||||||||||| || |||||||
Sbjct: 55 ataaatatacctgcatatcagtctaaggttctgctagaaatgacatgcagttatgctgcc 114
Query: 65 atattttactatcaggac 82
|| |||||||||||||||
Sbjct: 115 attttttactatcaggac 132
>RF00563;SNORA53;ABRP01170946.1/46044-46199 132908:Pteropus vampyrus
(large flying fox)
Length = 156
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 19 atgttagtctttggttctggtagaaatgacatgcaattgtgctgccatattttactatca 78
||||||||||| |||||| | ||||||||||||| |||||||||||| |||||||||||
Sbjct: 73 atgttagtcttaagttctgattgaaatgacatgcatttgtgctgccattttttactatca 132
Query: 79 ggactcgactggtgtgcggaca 100
|||| ||||| |||| |||||
Sbjct: 133 agacttgactgttgtgtggaca 154
>RF00563;SNORA53;ABRQ01135609.1/700-944 9813:Procavia capensis (cape
rock hyrax)
Length = 245
Score = 83.8 bits (42), Expect = 4e-16
Identities = 86/100 (86%), Gaps = 3/100 (3%)
Strand = Plus / Plus
Query: 1 tgagataaatatacctgcatgttagtctttggttctggtagaaatgacatgcaattgtgc 60
||||||||||||||||||| |||||||| |||||| |||||||| || | || |||
Sbjct: 147 tgagataaatatacctgcacattagtcttaagttctgatagaaatggcaag---ttatgc 203
Query: 61 tgccatattttactatcaggactcgactggtgtgcggaca 100
|||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 204 tgccattttttactatgaggacttgactggtgtgcggaca 243
>RF00563;SNORA53;AALT01644715.1/2046-1867 42254:Sorex araneus
(European shrew)
Length = 180
Score = 81.8 bits (41), Expect = 2e-15
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 tgagataaatatacctgcatgttagtctttggttctggtagaaatgacatgcaattgtgc 60
|||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 80 tgagatcaatatac-tgcatgttagtctttggttctgaaagaaatgacatgcaattatgc 138
Query: 61 tgcca 65
|||||
Sbjct: 139 tgcca 143
>RF00563;SNORA53;AALT01649588.1/13720-13571 42254:Sorex araneus
(European shrew)
Length = 150
Score = 77.8 bits (39), Expect = 3e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 11 atacctgcatgttagtctttggttctggtagaaatgacatgcaattgtgctgccatattt 70
||||||||||||||||||| |||||| |||||||||||||||||| |||| |||| ||
Sbjct: 59 atacctgcatgttagtcttaagttctgatagaaatgacatgcaattatgctaccattctt 118
Query: 71 tactatcagga 81
||||||||||
Sbjct: 119 gactatcagga 129
>RF00563;SNORA53;ABVD01041263.1/1513-1725 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 213
Score = 73.8 bits (37), Expect = 4e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 1 tgagataaatatacctgcatgttagtctttggttctggtagaaatgacatgca 53
|||||||||||||||||||||||| |||| ||||||| |||||||||| ||||
Sbjct: 147 tgagataaatatacctgcatgttactcttaggttctgatagaaatgacttgca 199
>RF00563;SNORA53;AALT01326266.1/1299-1396 42254:Sorex araneus
(European shrew)
Length = 98
Score = 69.9 bits (35), Expect = 7e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 8 aatatacctgcatgttagtctttggttctggtagaaatgacatgcaattgtgctgccata 67
|||||| |||||| |||||||| ||||||| |||||||||||| ||||| ||||||||
Sbjct: 7 aatatatctgcatattagtcttaggttctgatagaaatgacatacaattacgctgccatt 66
Query: 68 ttttactatcaggac 82
|| |||||||||||
Sbjct: 67 cttaactatcaggac 81
>RF00563;SNORA53;AALT01480935.1/1086-945 42254:Sorex araneus
(European shrew)
Length = 142
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 8 aatatacctgcatgttagtctttggttctggtagaaatgacatgcaatt 56
|||| ||||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct: 50 aatacacctgcacgttagtcttaggttctgatagaaatgacatgcaatt 98
>RF00563;SNORA53;AALT01663096.1/1136-951 42254:Sorex araneus
(European shrew)
Length = 186
Score = 63.9 bits (32), Expect = 4e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1 tgagataaatatacctgcatgttagtctttggttctggtagaaatgac 48
|||||| |||||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 85 tgagatcaatatatctgcatgttagtcttaggttctgatagaaatgac 132
>RF00563;SNORA53;AC140410.3/155965-155720 10090:Mus musculus (house
mouse)
Length = 246
Score = 61.9 bits (31), Expect = 2e-09
Identities = 81/95 (85%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 8 aatatacctgcatgttagtcttt-ggttctggtagaaatgacatgcaattgtgctgccat 66
|||||||||||||| ||||||| ||||||| | ||| |||||||| | ||||| |||
Sbjct: 152 aatatacctgcatgctagtcttcaggttctgatggaagtgacatgcg-tgatgctgtcat 210
Query: 67 attttactatcaggactcgactggtgtgcggacac 101
| ||||| ||||||||||||||||||||||||||
Sbjct: 211 gtgttactgtcaggactcgactggtgtgcggacac 245
>RF00563;SNORA53;AAGW01524250.1/2871-2793 9986:Oryctolagus
cuniculus (rabbit)
Length = 79
Score = 54.0 bits (27), Expect = 4e-07
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 17 gcatgttagtctttggttctggtagaaatgacatgcaattgtgctgccatattttactat 76
|||||||||||| |||||| ||||||||||||||| | ||||| || ||| |||||
Sbjct: 1 gcatgttagtctaatgttctgatagaaatgacatgcagtaatgctgtcagttttcactat 60
Query: 77 caggactcgactggtgtgc 95
||||||| | |||||||||
Sbjct: 61 caggactaggctggtgtgc 79
>RF00563;SNORA53;AALT01226300.1/2095-2017 42254:Sorex araneus
(European shrew)
Length = 79
Score = 50.1 bits (25), Expect = 6e-06
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 22 ttagtctttggttctggtagaaatgacatgcaattgtgctgccatattttactatcagga 81
||||| || ||||||| ||||||||||||||||| ||||||| | || ||| ||||||
Sbjct: 5 ttagtgttaggttctgacagaaatgacatgcaattatgctgccgttcttgactttcagga 64
Query: 82 ctcgactggtgtg 94
|| |||||||||
Sbjct: 65 ctgaactggtgtg 77
>RF00563;SNORA53;AANN01072932.1/1055-1296 9365:Erinaceus europaeus
(western European hedgehog)
Length = 242
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 caggactcgactggtgtgcggacac 101
|||||||||||||||||||||||||
Sbjct: 217 caggactcgactggtgtgcggacac 241
>RF00563;SNORA53;AALT01631180.1/591-833 42254:Sorex araneus
(European shrew)
Length = 243
Score = 46.1 bits (23), Expect = 1e-04
Identities = 49/55 (89%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 10 tatacctgcatgttagtctttggttctggtagaaat-gacatgcaattgtgctgc 63
||||||||||||| | |||| ||||||| ||||||| ||||||||||| ||||||
Sbjct: 157 tatacctgcatgt-actcttaggttctgatagaaatcgacatgcaattatgctgc 210
>RF00563;SNORA53;AAFR03039542.1/22343-22105 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 239
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1 tgagataaatatacctgcatgttagtctttggttctggtagaaatg 46
|||||| ||||||||||||| |||||| | |||||| ||||||||
Sbjct: 146 tgagatgaatatacctgcatattagtcatgcgttctgatagaaatg 191
