miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00459;MPMV_package;M12349.1/744-1019 11855:Mason-Pfizer monkey
virus
Length = 276
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tccagccccacgttgggcgcca 27
||||||||||||||||||||||
Sbjct: 22 tccagccccacgttgggcgcca 1
>RF00459;MPMV_package;AF126467.1/349-623 39068:Simian retrovirus 2
Length = 275
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tccagccccacgttgggcgcca 27
||||||||||||||||||||||
Sbjct: 22 tccagccccacgttgggcgcca 1
>RF00459;MPMV_package;AAKN02023931.1/25638-25903 10141:Cavia
porcellus (domestic guinea pig)
Length = 266
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tccagccccacgttgggcgcca 27
||||||||||||||||||||||
Sbjct: 22 tccagccccacgttgggcgcca 1
>RF00375;HIV_PBS;AY932713.1/514-612 11676:Human immunodeficiency
virus 1
Length = 99
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 9 agccccacgttgggcgccact 29
|||||||||||||||||||||
Sbjct: 76 agccccacgttgggcgccact 56
>RF00375;HIV_PBS;U81466.1/410-508 11676:Human immunodeficiency
virus 1
Length = 99
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 5 ttccagccccacgttgggcgccact 29
|||| ||||||||||||||||||||
Sbjct: 80 ttccggccccacgttgggcgccact 56
