miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 145 bits (73), Expect = 1e-34
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 6 tgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactata 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactata 61
Query: 66 caacctactgtctttct 82
||| |||||||||||||
Sbjct: 62 caatctactgtctttct 78
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 117 bits (59), Expect = 2e-26
Identities = 76/79 (96%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 5 gtgggatgaggtagtaggttgtatag-ttttagggtcacaccca-cactgggagataact 62
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 1 gtgggatgaggtagtaggttgtatagtttttagggtcacacccaccactgggagataact 60
Query: 63 atacaacctactgtctttc 81
|||||| ||||||||||||
Sbjct: 61 atacaatctactgtctttc 79
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 113 bits (57), Expect = 4e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 5 gtgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactat 64
||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 1 gtgggatgaggtagtaggttgtatagttttacggtcatacccgcactgggagataactat 60
Query: 65 acaacctactgtctttc 81
|||||||||||||||
Sbjct: 61 taaacctactgtctttc 77
>RF00027;let-7;BAAF04080487.1/5225-5305 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 6 tgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactata 65
|||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 2 tgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactata 61
Query: 66 caacctactgtctttctcaa 85
|| |||||||||||||||||
Sbjct: 62 cagcctactgtctttctcaa 81
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 95.6 bits (48), Expect = 9e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 6 tgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactata 65
|||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||
Sbjct: 2 tgggatgaggtagtagattgtatagttttagggtcatacccggtcttggagataactata 61
Query: 66 caacctactgtctttc 81
||| ||||||||||||
Sbjct: 62 caatctactgtctttc 77
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 5 gtgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactat 64
||||||||||||||||| |||||||||||| || ||||||| |||||||||||||||
Sbjct: 1 gtgggatgaggtagtagtttgtatagttttgggatcacaccagatctgggagataactat 60
Query: 65 acaacctactgtctttctca 84
||| |||||||||||||||
Sbjct: 61 acagtctactgtctttctca 80
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 87.7 bits (44), Expect = 2e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 6 tgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactata 65
|||||||||||||||||||||||||||||||||| |||||| | | |||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttagggttacacccttccggtcagataactata 61
Query: 66 caacctactgtctttc 81
||| ||||||||||||
Sbjct: 62 caatctactgtctttc 77
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 79.8 bits (40), Expect = 5e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 6 tgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactata 65
|||| ||||||||||||||||||||||||||||||| |||| ||| |||| ||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttttagggtcattcccatgctgtcagatgactata 61
Query: 66 caacctactgtctttc 81
|||| |||||||||||
Sbjct: 62 caacttactgtctttc 77
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 75.8 bits (38), Expect = 8e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 8 ggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactataca 67
|||||||||||||| ||||||||||||||||| | |||| || |||||||||||||||
Sbjct: 4 ggatgaggtagtagattgtatagttttagggttataccccatcttggagataactataca 63
Query: 68 acctactgtctttc 81
||||||||||||
Sbjct: 64 gtctactgtctttc 77
>RF00027;let-7;CR735130.17/58450-58371 7955:Danio rerio
(zebrafish)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 5 gtgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactat 64
|||| |||||||||||| ||||||||||| || ||||||| |||||||||||||||
Sbjct: 1 gtggaatgaggtagtagtttgtatagtttg-ggatcacaccagatctgggagataactat 59
Query: 65 acaacctactgtctttctca 84
||| ||||||||||||||||
Sbjct: 60 acagcctactgtctttctca 79
>RF00027;let-7;AAPY01663784.1/776-859 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 65.9 bits (33), Expect = 8e-11
Identities = 70/80 (87%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 8 ggatgaggtagtaggttgtatagttttagggtcacaccca-cactgggagataa--ctat 64
|||| ||||||||| |||||||||| |||||||||||||| || ||| |||| | ||||
Sbjct: 4 ggataaggtagtagattgtatagttctagggtcacacccatcattggaagatcactctat 63
Query: 65 acaacctactgtctttctca 84
|||| |||||||||||||||
Sbjct: 64 acaatctactgtctttctca 83
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 65.9 bits (33), Expect = 8e-11
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 6 tgggatgaggtagtaggttgtatagtttta-gggtcacacccacactgggagataactat 64
|||| ||||||||||||||||||||||||| |||||| ||| ||| ||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttttaggggtcatgcccttcctgtcagataactat 61
Query: 65 acaacctactgtctttc 81
||||| |||||||||||
Sbjct: 62 acaacttactgtctttc 78
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 66/78 (84%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 tgggatgaggtagtaggttgtatagttttagggtcacacccac--actgggagataacta 63
|||| ||||||||||||||||||||||| ||||| | ||| | ||| ||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagtttgggggtcgctccctctgtctgtgagataacta 61
Query: 64 tacaacctactgtctttc 81
|||| ||||||||||||
Sbjct: 62 tacagtctactgtctttc 79
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 gggatgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||||||
Sbjct: 3 gggatgaggtagtaggttgtatagttt 29
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 gagataactatacaacctactgtctttct 82
||||||||||||||| |||||||||||||
Sbjct: 51 gagataactatacaatctactgtctttct 79
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gatgaggtagtaggttgtatagtt 32
||||||||||||||||||||||||
Sbjct: 5 gatgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tgggatgaggtagtaggttgtatagttt 33
|||| |||||||||||||||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tgggatgaggtagtaggttgtatagttt 33
|||| |||||||||||||||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttt 29
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 gataactatacaacctactgtctttc 81
||||||||||||| ||||||||||||
Sbjct: 50 gataactatacaatctactgtctttc 75
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 gagataactatacaacctactgtctttc 81
||||||||||||||| ||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttc 79
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 gagataactatacaacctactgtctttc 81
||||||||||||||| ||||||||||||
Sbjct: 51 gagataactatacaatctactgtctttc 78
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 gagataactatacaacctactgtctttc 81
||||||||||||||| ||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttc 79
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttt 34
||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtttt 30
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttttagggtcacacccacactgggagataactatacaacc 70
||||||||||| ||| |||||| | ||||||| || | ||| | | ||||||||||| |
Sbjct: 7 tgaggtagtagattgaatagttgtggggtcacggcctccctgtgtgctaactatacaatc 66
Query: 71 tactgtctttc 81
|||||||||||
Sbjct: 67 tactgtctttc 77
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 ggagataactatacaacctactg 75
|||||||||||||||||||||||
Sbjct: 55 ggagataactatacaacctactg 77
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 ggagataactatacaacctactg 75
|||||||||||||||||||||||
Sbjct: 55 ggagataactatacaacctactg 77
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtt 27
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 atgaggtagtaggttgtatagttttagggt 39
|||||||||||| |||||||||||| ||||
Sbjct: 6 atgaggtagtagattgtatagttttggggt 35
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
