miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 5 ccaggctgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaggctgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaac 60
Query: 65 ctcctagctttccctga 81
|||||||||||||||||
Sbjct: 61 ctcctagctttccctga 77
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 105 bits (53), Expect = 9e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 5 ccaggctgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaac 64
||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |
Sbjct: 1 ccaggttgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagc 60
Query: 65 ctcctagctttcc 77
|||||||||||||
Sbjct: 61 ctcctagctttcc 73
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 95.6 bits (48), Expect = 8e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 6 caggctgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacc 65
|||| |||||||||||||||||||||| ||| | ||| ||| ||||||||||||||| ||
Sbjct: 2 caggttgaggtagtaggttgtatagttcagagtgacaccacaggagataactgtacagcc 61
Query: 66 tcctagctttccctga 81
||||||||||||||||
Sbjct: 62 tcctagctttccctga 77
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 93.7 bits (47), Expect = 3e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 70
|||||||||||||||||||||||||| | ||| ||| ||||||||||||||| |||||||
Sbjct: 7 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 66
Query: 71 gctttcc 77
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 70
|||||||||||||||||||||| ||||| ||| | | ||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctccta 66
Query: 71 gctttccctga 81
|||||||||||
Sbjct: 67 gctttccctga 77
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 89.7 bits (45), Expect = 5e-18
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaataacatca-ctggagataactgtacaacctcct 69
|||||||||||||||||| ||||||||||||| || | ||||||||||||||| ||||||
Sbjct: 7 tgaggtagtaggttgtatggtttagaataacaccatcaggagataactgtacagcctcct 66
Query: 70 agctttccc 78
|||||||||
Sbjct: 67 agctttccc 75
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 70
|||||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattacatcgtgggagttaactgtacagcctccta 66
Query: 71 gctttccc 78
||||||||
Sbjct: 67 gctttccc 74
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 85.7 bits (43), Expect = 8e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 6 caggctgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacc 65
|||| |||||||||||||||||||||||||| ||| || ||||||| ||||||||||
Sbjct: 2 cagggtgaggtagtaggttgtatagtttagagatacaccatgggagatagctgtacaacc 61
Query: 66 tcctagctttccctg 80
|||||||||||||||
Sbjct: 62 tcctagctttccctg 76
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 5 ccaggctgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaac 64
||||| ||||||||| |||||||||||| ||||| ||| | | |||||| ||||||||||
Sbjct: 1 ccaggatgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaac 60
Query: 65 ctcctagctttccctga 81
||||||||||| |||||
Sbjct: 61 ctcctagcttttcctga 77
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 79.8 bits (40), Expect = 5e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 6 caggctgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacc 65
|||| |||||||||||||||||||||| ||| | || ||| |||||| |||||||| ||
Sbjct: 2 caggttgaggtagtaggttgtatagttcagagtgacgccacaggagatgactgtacagcc 61
Query: 66 tcctagctttccctga 81
||||||||||||||||
Sbjct: 62 tcctagctttccctga 77
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 70
|||||||||||||||||||||| |||| |||||| ||||||||||||| |||||| |||
Sbjct: 7 tgaggtagtaggttgtatagttgagaagtacatcattggagataactgtgcaacctgcta 66
Query: 71 gct 73
|||
Sbjct: 67 gct 69
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 70
|||||||||||||||||| ||||||| | ||| | | |||| |||||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatggtttagagtcacaccccgggagttaactgtacaaccttcta 66
Query: 71 gctttcc 77
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 70
|||||||||||||||||| ||||||||| ||| | |||| |||||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatggtttagaattacaccctgggagttaactgtacaaccttcta 66
Query: 71 gctttcc 77
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 46 ctggagataactgtacaacctcctagctttccctg 80
||||||||||||||||||||| |||||||||||||
Sbjct: 45 ctggagataactgtacaaccttctagctttccctg 79
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacc 65
|||||||||||||||||||||| |||| ||| || ||||||| |||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttcagaagtacaacattggagatgactgtacaacc 61
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaata 39
|||||||||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttagaata 34
>RF00027;let-7;AAPE01049369.1/870-945 59463:Myotis lucifugus
(little brown bat)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 ccaggctgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaac 64
||||| ||||||||| |||| |||||||||||| |||||| |||| |||||||||| |
Sbjct: 1 ccaggttgaggtagtcagttggatagtttagaatgacatca-gggaggtaactgtacagc 59
Query: 65 ctcctagct 73
|||||||||
Sbjct: 60 ctcctagct 68
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaat 38
||||||||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttagaat 33
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaat 38
||||||||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttagaat 33
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtttagaata 39
||||||||||||||||||||||| |||||
Sbjct: 6 tgaggtagtaggttgtatagtttggaata 34
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ccaggctgaggtagtaggttgtatagttt 33
||||| |||||||||||||||||||||||
Sbjct: 1 ccagggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gctgaggtagtaggttgtatagtt 32
||||||||||||||||||||||||
Sbjct: 5 gctgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gctgaggtagtaggttgtatagtt 32
||||||||||||||||||||||||
Sbjct: 4 gctgaggtagtaggttgtatagtt 27
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 caggctgaggtagtaggttgtatagttt 33
|||| |||||||||||||||||||||||
Sbjct: 2 cagggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01140498.1/764-841 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 ataactgtacaacctcctagctttccct 79
||||||||||||||| ||||||||||||
Sbjct: 51 ataactgtacaaccttctagctttccct 78
>RF00027;let-7;AAUQ01090552.1/622-543 408171:epibiont metagenome
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 54 aactgtacaacctcctagctttccctg 80
||||||||||||| |||||||||||||
Sbjct: 52 aactgtacaaccttctagctttccctg 78
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ctgaggtagtaggttgtatagtt 32
|||||||||||||||||||||||
Sbjct: 6 ctgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagttt 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtt 32
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
