miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 153 bits (77), Expect = 5e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 9 tcgggatgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgggatgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagc 60
Query: 69 ctcctagctttcctcga 85
|||||||||||||||||
Sbjct: 61 ctcctagctttcctcga 77
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 111 bits (56), Expect = 2e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 74
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagcctccta 66
Query: 75 gctttcct 82
||||||||
Sbjct: 67 gctttcct 74
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 101 bits (51), Expect = 2e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 74
|||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttcagagtgacaccacaggagataactgtacagcctccta 66
Query: 75 gctttcc 81
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 95.6 bits (48), Expect = 9e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 10 cgggatgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcc 69
|||| |||||||||||||||||||||||||| ||||| | ||||| |||||||||||||
Sbjct: 2 cggggtgaggtagtaggttgtatagtttagaattacatcgtgggagttaactgtacagcc 61
Query: 70 tcctagctttcc 81
||||||||||||
Sbjct: 62 tcctagctttcc 73
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 93.7 bits (47), Expect = 4e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 74
|||||||||||||||||||||||||| | ||| ||| ||||||||||||||| |||||||
Sbjct: 7 tgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaacctccta 66
Query: 75 gctttcc 81
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 93.7 bits (47), Expect = 4e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 74
||||||||||||||||||||||||||| |||| || |||||||| ||||||| |||||||
Sbjct: 7 tgaggtagtaggttgtatagtttagagatacaccatgggagatagctgtacaacctccta 66
Query: 75 gctttcc 81
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 85.7 bits (43), Expect = 9e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 74
|||||||||||||||||||||| ||||| || ||| |||||| ||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttcagagtgacgccacaggagatgactgtacagcctccta 66
Query: 75 gctttcc 81
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 10 cgggatgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcc 69
|||| |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| ||
Sbjct: 2 cgggttgaggtagtaggttgtatggtttagagtcacaccccgggagttaactgtacaacc 61
Query: 70 tcctagctttcct 82
| |||||||||||
Sbjct: 62 ttctagctttcct 74
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 79.8 bits (40), Expect = 6e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttagagttacaaca-cgggagataactgtacagcctcct 73
|||||||||||||||||| ||||||| | ||| || | ||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggtttagaataacaccatcaggagataactgtacagcctcct 66
Query: 74 agctttcc 81
||||||||
Sbjct: 67 agctttcc 74
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 74
|||||||||||||||||||||| ||| ||||| | | |||||||||||||| |||||||
Sbjct: 7 tgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctccta 66
Query: 75 gctttcc 81
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 10 cgggatgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcc 69
|||| |||||||||||||||||| ||||||| ||||| | ||||| |||||||||| ||
Sbjct: 2 cgggttgaggtagtaggttgtatggtttagaattacaccctgggagttaactgtacaacc 61
Query: 70 tcctagctttcct 82
| |||||||||||
Sbjct: 62 ttctagctttcct 74
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 12 ggatgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctc 71
|||||||||||| |||||||||||| ||| | ||| | |||||||| |||||||| ||||
Sbjct: 4 ggatgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaacctc 63
Query: 72 ctagcttt 79
||||||||
Sbjct: 64 ctagcttt 71
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 56.0 bits (28), Expect = 8e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtaca 66
|||||||||||||||||||||| ||| ||||||| |||||| ||||||||
Sbjct: 7 tgaggtagtaggttgtatagttcagaagtacaacattggagatgactgtaca 58
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 74
|||||||||||||||||||||| ||| |||| || |||||||||||| || ||| |||
Sbjct: 7 tgaggtagtaggttgtatagttgagaagtacatcattggagataactgtgcaacctgcta 66
Query: 75 gctttcct 82
||| ||||
Sbjct: 67 gctctcct 74
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 gggatgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||||||
Sbjct: 3 gggatgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAPE01049369.1/870-945 59463:Myotis lucifugus
(little brown bat)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 74
||||||||| |||| |||||||||| | ||| || ||||| ||||||||||||||||||
Sbjct: 7 tgaggtagtcagttggatagtttagaatgacatca-gggaggtaactgtacagcctccta 65
Query: 75 gct 77
|||
Sbjct: 66 gct 68
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 gggatgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||||||
Sbjct: 3 gggatgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 gggatgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||||||
Sbjct: 3 gggatgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 gggatgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||||||
Sbjct: 3 gggatgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttaga 40
||||||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttaga 40
||||||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtttaga 40
||||||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttaga 31
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 gatgaggtagtaggttgtatagtt 36
||||||||||||||||||||||||
Sbjct: 5 gatgaggtagtaggttgtatagtt 28
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 gggatgaggtagtaggttgtatagttt 37
||||||||||||||| |||||||||||
Sbjct: 3 gggatgaggtagtagattgtatagttt 29
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 gggatgaggtagtaggttgtatagttt 37
||||||||||||||| |||||||||||
Sbjct: 3 gggatgaggtagtagtttgtatagttt 29
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagttt 37
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04080487.1/5225-5305 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 gggatgaggtagtaggttgtatagttt 37
||||||||||||||| |||||||||||
Sbjct: 3 gggatgaggtagtagtttgtatagttt 29
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtt 36
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtt 36
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatagtt 36
||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtt 27
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 ggatgaggtagtaggttgtatagttt 37
|||||||||||||| |||||||||||
Sbjct: 4 ggatgaggtagtagattgtatagttt 29
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 52 ggagataactgtacagcctcctagctttcc 81
||||||||||||||| ||| ||||||||||
Sbjct: 47 ggagataactgtacaaccttctagctttcc 76
