miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio (zebrafish)
Length = 87
Score = 172 bits (87), Expect = 7e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 22 acaaggtgaggtagtaggttgtatagtttggtgggagggatcaaaccctgttcaggtgat 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acaaggtgaggtagtaggttgtatagtttggtgggagggatcaaaccctgttcaggtgat 60
Query: 82 aactatacagtctattgccttccttgt 108
|||||||||||||||||||||||||||
Sbjct: 61 aactatacagtctattgccttccttgt 87
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio (zebrafish)
Length = 86
Score = 115 bits (58), Expect = 1e-25
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 23 caaggtgaggtagtaggttgtatagtttggtgggagggatcaaaccctgttcaggtgata 82
||||||||||||||||||||||||||||| ||||| |||||| | ||| |||||||||||
Sbjct: 2 caaggtgaggtagtaggttgtatagtttg-tgggaaggatcacatcctattcaggtgata 60
Query: 83 actatacagtctattgccttcc 104
||||||||||||||||||||||
Sbjct: 61 actatacagtctattgccttcc 82
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 109 bits (55), Expect = 9e-24
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 25 aggtgaggtagtaggttgtatagtttggtgggaggga-tcaaaccctgttcaggtgataa 83
||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||
Sbjct: 4 aggtgaggtagtaggttgtatagtttggtgggagggatttgatcccatttcaggtgataa 63
Query: 84 ctatacagtctattgccttcctt 106
|||||||||||||||||||||||
Sbjct: 64 ctatacagtctattgccttcctt 86
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus (chicken)
Length = 88
Score = 109 bits (55), Expect = 9e-24
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 25 aggtgaggtagtaggttgtatagtttggtgggaggga-tcaaaccctgttcaggtgataa 83
||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct: 4 aggtgaggtagtaggttgtatagtttggtgggagggattctgtcccatttcaggtgataa 63
Query: 84 ctatacagtctattgccttcctt 106
|||||||||||||||||||||||
Sbjct: 64 ctatacagtctattgccttcctt 86
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes (Japanese
medaka)
Length = 87
Score = 93.7 bits (47), Expect = 5e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagtttggtgggagggatcaaaccctgttcaggtgataact 85
||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttggtgggtgggactccacccttcttaggtgataact 64
Query: 86 atacagtctattgccttcc 104
|||||||||||||||||||
Sbjct: 65 atacagtctattgccttcc 83
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 87.7 bits (44), Expect = 3e-17
Identities = 73/82 (89%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagtttggtgggagggatcaaaccctgttcaggtgataact 85
||||||||||||||||||||||||||||||| ||||| || | ||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttggtgggtgggattg---cccgcccaggtgataact 61
Query: 86 atacagtctattgccttccttg 107
||||||||||||||||||||||
Sbjct: 62 atacagtctattgccttccttg 83
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 73.8 bits (37), Expect = 5e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 23 caaggtgaggtagtaggttgtatagtttggtgggagggatcaaaccctgttcaggtgata 82
|||||||||||||||||||||||||||| |||||| || | | ||| |||| |||||
Sbjct: 2 caaggtgaggtagtaggttgtatagttt-gtgggatggcttggatcctactcagatgata 60
Query: 83 actatacagtctattgccttccttg 107
||||||||||||||| |||||||||
Sbjct: 61 actatacagtctattaccttccttg 85
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus aculeatus
(three-spined stickleback)
Length = 86
Score = 69.9 bits (35), Expect = 8e-12
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 25 aggtgaggtagtaggttgtatagtttggtgggagggatcaaaccctgttcaggtgataac 84
|||||||||||||||||||||||||| |||||| || ||| ||| ||||||||||||
Sbjct: 4 aggtgaggtagtaggttgtatagttt-gtgggattgagtaaatcctactcaggtgataac 62
Query: 85 tatacagtctattgccttccttg 107
|| |||| ||||| |||||||||
Sbjct: 63 tacacagcctattaccttccttg 85
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 66 accctgttcaggtgataactatacagtctattgccttcc 104
|||||||||||| |||||||||||| |||||||||||||
Sbjct: 45 accctgttcaggagataactatacaatctattgccttcc 83
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 23 caaggtgaggtagtaggttgtatagttt 50
||||||||||||||||||||||||||||
Sbjct: 2 caaggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagtttgg 52
|||||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagtttgg 30
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagtttgg 52
|||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagtttgg 52
|||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagtttgg 52
|||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagttt 28
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagttt 28
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 aggtgaggtagtaggttgtatagtt 49
|||||||||||||||||||||||||
Sbjct: 4 aggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 aggtgaggtagtaggttgtatagtt 49
|||||||||||||||||||||||||
Sbjct: 4 aggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 23 caaggtgaggtagtaggttgtatagtt 49
|||| ||||||||||||||||||||||
Sbjct: 2 caagctgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagttt 50
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
(jewel wasp)
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagt 48
|||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagt 27
>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
(honey bee)
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 ggtgaggtagtaggttgtatagt 48
|||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagt 27
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagtt 49
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagtt 49
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagtt 49
||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtt 27
>RF00027;let-7;AAGJ02034255.1/6675-6598 7668:Strongylocentrotus
purpuratus
Length = 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 gtgaggtagtaggttgtatagtttgg 52
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttatatagtttgg 31
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 gataactatacagtctattgccttcc 104
|||||||||||| |||||||||||||
Sbjct: 59 gataactatacaatctattgccttcc 84
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagtt 49
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagtt 49
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 79 gataactatacagtctattgccttcc 104
|||||||||||| |||||||||||||
Sbjct: 58 gataactatacaatctattgccttcc 83
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 tgaggtagtaggttgtatagtt 49
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
