miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio (zebrafish)
Length = 86
Score = 170 bits (86), Expect = 3e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 23 tcaaggtgaggtagtaggttgtatagtttgtgggaaggatcacatcctattcaggtgata 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaaggtgaggtagtaggttgtatagtttgtgggaaggatcacatcctattcaggtgata 60
Query: 83 actatacagtctattgccttccctga 108
||||||||||||||||||||||||||
Sbjct: 61 actatacagtctattgccttccctga 86
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio (zebrafish)
Length = 87
Score = 115 bits (58), Expect = 1e-25
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 24 caaggtgaggtagtaggttgtatagtttg-tgggaaggatcacatcctattcaggtgata 82
||||||||||||||||||||||||||||| ||||| |||||| | ||| |||||||||||
Sbjct: 2 caaggtgaggtagtaggttgtatagtttggtgggagggatcaaaccctgttcaggtgata 61
Query: 83 actatacagtctattgccttcc 104
||||||||||||||||||||||
Sbjct: 62 actatacagtctattgccttcc 83
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 97.6 bits (49), Expect = 3e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 24 caaggtgaggtagtaggttgtatagtttgtgggaaggatcacatcctattcaggtgataa 83
|||||||||||||||||||||||||||||||||| || | |||||| |||| ||||||
Sbjct: 2 caaggtgaggtagtaggttgtatagtttgtgggatggcttggatcctactcagatgataa 61
Query: 84 ctatacagtctattgccttcc 104
|||||||||||||| ||||||
Sbjct: 62 ctatacagtctattaccttcc 82
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 89.7 bits (45), Expect = 8e-18
Identities = 74/81 (91%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 26 aggtgaggtagtaggttgtatagtttg-tgggaaggatcacatcctatt-caggtgataa 83
||||||||||||||||||||||||||| ||||| |||| |||| ||| ||||||||||
Sbjct: 4 aggtgaggtagtaggttgtatagtttggtgggagggatttgatcccatttcaggtgataa 63
Query: 84 ctatacagtctattgccttcc 104
|||||||||||||||||||||
Sbjct: 64 ctatacagtctattgccttcc 84
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus aculeatus
(three-spined stickleback)
Length = 86
Score = 85.7 bits (43), Expect = 1e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 26 aggtgaggtagtaggttgtatagtttgtgggaaggatcacatcctattcaggtgataact 85
|||||||||||||||||||||||||||||||| || | |||||| |||||||||||||
Sbjct: 4 aggtgaggtagtaggttgtatagtttgtgggattgagtaaatcctactcaggtgataact 63
Query: 86 atacagtctattgccttcc 104
| |||| ||||| ||||||
Sbjct: 64 acacagcctattaccttcc 82
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus (chicken)
Length = 88
Score = 81.8 bits (41), Expect = 2e-15
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 26 aggtgaggtagtaggttgtatagtttg-tgggaaggatcacatcctatt-caggtgataa 83
||||||||||||||||||||||||||| ||||| |||| ||| ||| ||||||||||
Sbjct: 4 aggtgaggtagtaggttgtatagtttggtgggagggattctgtcccatttcaggtgataa 63
Query: 84 ctatacagtctattgccttcc 104
|||||||||||||||||||||
Sbjct: 64 ctatacagtctattgccttcc 84
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes (Japanese
medaka)
Length = 87
Score = 77.8 bits (39), Expect = 3e-14
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagtttg-tgggaaggatcacatcctattcaggtgataact 85
|||||||||||||||||||||||||| |||| ||| || ||| | |||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttggtgggtgggactccacccttcttaggtgataact 64
Query: 86 atacagtctattgccttccctga 108
|||||||||||||||||||||||
Sbjct: 65 atacagtctattgccttccctga 87
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 74 caggtgataactatacagtctattgccttcc 104
|||||||||||||||||||||||||||||||
Sbjct: 50 caggtgataactatacagtctattgccttcc 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagtttg 52
||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttg 30
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 72 ttcaggtgataactatacagtctattgccttccctga 108
|||||| |||||||||||| |||||||||||||||||
Sbjct: 51 ttcaggagataactatacaatctattgccttccctga 87
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 24 caaggtgaggtagtaggttgtatagttt 51
||||||||||||||||||||||||||||
Sbjct: 2 caaggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 66 atcctattcaggtgataactatacagtctattgccttccctga 108
||||| ||| || |||||||||||| |||||||||||||||||
Sbjct: 46 atccttttccggagataactatacaatctattgccttccctga 88
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagtttg 52
||||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagtttg 29
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagtttg 52
||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttg 30
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagtttg 52
||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttg 30
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagtttg 52
||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagtttg 30
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 79 gataactatacagtctattgccttccctga 108
|||||||||||| |||||||||||||||||
Sbjct: 58 gataactatacaatctattgccttccctga 87
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagttt 28
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||||
Sbjct: 4 ggtgaggtagtaggttgtatagttt 28
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 aggtgaggtagtaggttgtatagtt 50
|||||||||||||||||||||||||
Sbjct: 4 aggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 aggtgaggtagtaggttgtatagtt 50
|||||||||||||||||||||||||
Sbjct: 4 aggtgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tcaaggtgaggtagtaggttgtatagtt 50
||||| ||||||||||||||||||||||
Sbjct: 1 tcaagctgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagttt 51
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
(jewel wasp)
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagt 49
|||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagt 27
>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
(honey bee)
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 ggtgaggtagtaggttgtatagt 49
|||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaggttgtatagt 27
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagtt 50
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagtt 50
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagtt 50
||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtt 27
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagtt 50
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagtt 50
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 tgaggtagtaggttgtatagtt 50
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
