miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 115 bits (58), Expect = 1e-25
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 23 tgaggtagtaggttgtatggtttagaattttgccctgggagttaactgtacaaccttcta 82
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggtttagaattacaccctgggagttaactgtacaaccttcta 66
Query: 83 gctttccttg 92
||||||||||
Sbjct: 67 gctttccttg 76
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 89.7 bits (45), Expect = 7e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 23 tgaggtagtaggttgtatggtttagaattttgccctgggagttaactgtacaaccttcta 82
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggtttagagtcacaccccgggagttaactgtacaaccttcta 66
Query: 83 gctttcctt 91
|||||||||
Sbjct: 67 gctttcctt 75
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 69.9 bits (35), Expect = 6e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 23 tgaggtagtaggttgtatggtttagaattttgccctgggagttaactgtacaaccttcta 82
|||||||||||||||||| |||||||||| | ||||||||||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattacatcgtgggagttaactgtacagcctccta 66
Query: 83 gctttcc 89
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 63.9 bits (32), Expect = 4e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 17 ccaggctgaggtagtaggttgtatggtttagaattttgccctgggagttaactgtacaac 76
||||| |||||||||||||||||| |||||||||| | ||||| |||||||||| |
Sbjct: 1 ccaggttgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagc 60
Query: 77 cttctagctttccttg 92
|| |||||||||||||
Sbjct: 61 ctcctagctttccttg 76
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 17 ccaggctgaggtagtaggttgtatggtttagaat 50
|||||||||||||||||||||||| |||||||||
Sbjct: 1 ccaggctgaggtagtaggttgtatagtttagaat 34
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 23 tgaggtagtaggttgtatggtttagaat 50
||||||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggtttagaat 34
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 56.0 bits (28), Expect = 1e-07
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 18 caggctgaggtagtaggttgtatggtttagaattttgccctgggagttaactgtacaacc 77
|||| |||||||||||||||||| ||||||| | || |||||| || ||||||||||
Sbjct: 2 cagggtgaggtagtaggttgtatagtttagagatacaccatgggagatagctgtacaacc 61
Query: 78 ttctagctttcc 89
| ||||||||||
Sbjct: 62 tcctagctttcc 73
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 54.0 bits (27), Expect = 4e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 23 tgaggtagtaggttgtatggtttagaattttgccctgggagttaactgtacaaccttcta 82
|||||||||||||||||| ||| |||||| ||| ||| |||||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctccta 66
Query: 83 gctttcc 89
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 ggagttaactgtacaaccttctagctttcc 89
|||| |||||||||||||||||||||||||
Sbjct: 47 ggagataactgtacaaccttctagctttcc 76
>RF00027;let-7;BAAE01140498.1/764-841 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 taactgtacaaccttctagctttcc 89
|||||||||||||||||||||||||
Sbjct: 52 taactgtacaaccttctagctttcc 76
>RF00027;let-7;AAUQ01090552.1/622-543 408171:epibiont metagenome
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 aactgtacaaccttctagctttcc 89
||||||||||||||||||||||||
Sbjct: 52 aactgtacaaccttctagctttcc 75
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tgaggtagtaggttgtatggtttagaat 50
|||||||||||||||||| |||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttagaat 33
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tgaggtagtaggttgtatggtttagaat 50
|||||||||||||||||| |||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttagaat 33
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tgaggtagtaggttgtatggtttagaat 50
|||||||||||||||||| |||||||||
Sbjct: 6 tgaggtagtaggttgtatagtttagaat 33
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 23 tgaggtagtaggttgtatggtttagaattttgccctgggagttaactgtacaaccttcta 82
|||||||||||||||||| ||||||| || | ||||| |||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 66
Query: 83 gctttcct 90
||||||||
Sbjct: 67 gctttcct 74
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 17 ccaggctgaggtagtaggttgtatggtttagaattttgccctgggagttaactgtacaac 76
||||| ||||||||| |||||||| ||| ||||| ||| ||||| | ||||||||||
Sbjct: 1 ccaggatgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaac 60
Query: 77 cttctagcttt 87
|| ||||||||
Sbjct: 61 ctcctagcttt 71
