miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 115 bits (58), Expect = 1e-25
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaaccttcta 74
||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggtttagaattacaccctgggagttaactgtacaaccttcta 66
Query: 75 gctttccttg 84
||||||||||
Sbjct: 67 gctttccttg 76
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaaccttcta 74
||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatggtttagagtcacaccccgggagttaactgtacaaccttcta 66
Query: 75 gctttcctt 83
|||||||||
Sbjct: 67 gctttcctt 75
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 9 ccaggctgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaac 68
|||||||||||||||||||||||| |||| |||| ||| || |||| ||||||||||||
Sbjct: 1 ccaggctgaggtagtaggttgtatagtttagaataacatcactggagataactgtacaac 60
Query: 69 cttctagctttcc 81
|| ||||||||||
Sbjct: 61 ctcctagctttcc 73
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 79.8 bits (40), Expect = 6e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 9 ccaggctgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaac 68
||||| |||||||||||||||||| |||| |||| ||| || ||||| |||||||||| |
Sbjct: 1 ccaggttgaggtagtaggttgtatagtttagaattacatcaagggagataactgtacagc 60
Query: 69 cttctagctttccttg 84
|| |||||||||||||
Sbjct: 61 ctcctagctttccttg 76
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaaccttcta 74
|||||||||||||||||| |||| |||| ||| | ||||||||||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagaattacatcgtgggagttaactgtacagcctccta 66
Query: 75 gctttcc 81
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;AAWZ01007717.1/43277-43200 28377:Anolis
carolinensis (green anole)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatggtttcgaatgacaccat-gggagttaactgtacaaccttct 73
||||||||||||||||||||||| |||| ||||||| |||| |||||||||| ||| ||
Sbjct: 7 tgaggtagtaggttgtatggtttagaataacaccatcaggagataactgtacagcctcct 66
Query: 74 agctttcc 81
||||||||
Sbjct: 67 agctttcc 74
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 10 caggctgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaacc 69
|||| |||||||||||||||||| |||| || |||||||||||| || ||||||||||
Sbjct: 2 cagggtgaggtagtaggttgtatagtttagagatacaccatgggagatagctgtacaacc 61
Query: 70 ttctagctttcc 81
| ||||||||||
Sbjct: 62 tcctagctttcc 73
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaaccttcta 74
|||||||||||||||||| |||| || | ||| || ||||| |||||||||| ||| |||
Sbjct: 7 tgaggtagtaggttgtatagtttagagttacaacacgggagataactgtacagcctccta 66
Query: 75 gctttcct 82
||||||||
Sbjct: 67 gctttcct 74
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 10 caggctgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaacc 69
|||| |||||||||||||||||| ||| || |||||||| |||| |||||||||| ||
Sbjct: 2 caggttgaggtagtaggttgtatagttcagagtgacaccacaggagataactgtacagcc 61
Query: 70 ttctagctttcc 81
| ||||||||||
Sbjct: 62 tcctagctttcc 73
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 9 ccaggctgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaac 68
||||| ||||||||| |||||||| ||| |||||||||| ||||| | ||||||||||
Sbjct: 1 ccaggatgaggtagtgggttgtatagttgagaatgacaccccgggagatgactgtacaac 60
Query: 69 cttctagcttt 79
|| ||||||||
Sbjct: 61 ctcctagcttt 71
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaaccttcta 74
|||||||||||||||||| ||| |||| ||||| ||| |||||||||||||| |||
Sbjct: 7 tgaggtagtaggttgtatagttgagaattacacccccagagataactgtacaacctccta 66
Query: 75 gctttcc 81
|||||||
Sbjct: 67 gctttcc 73
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 15 tgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaaccttcta 74
|||||||||||||||||| ||| ||| ||| ||| |||| ||||||| |||||| |||
Sbjct: 7 tgaggtagtaggttgtatagttgagaagtacatcattggagataactgtgcaacctgcta 66
Query: 75 gctttccttgg 85
||| |||||||
Sbjct: 67 gctctccttgg 77
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 ggagttaactgtacaaccttctagctttcc 81
|||| |||||||||||||||||||||||||
Sbjct: 47 ggagataactgtacaaccttctagctttcc 76
>RF00027;let-7;BAAE01140498.1/764-841 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 taactgtacaaccttctagctttcc 81
|||||||||||||||||||||||||
Sbjct: 52 taactgtacaaccttctagctttcc 76
>RF00027;let-7;AAUQ01090552.1/622-543 408171:epibiont metagenome
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 aactgtacaaccttctagctttcc 81
||||||||||||||||||||||||
Sbjct: 52 aactgtacaaccttctagctttcc 75
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 10 caggctgaggtagtaggttgtatggtttcgaatgacaccatgggagttaactgtacaacc 69
|||| |||||||||||||||||| ||| || |||| ||| |||| | |||||||| ||
Sbjct: 2 caggttgaggtagtaggttgtatagttcagagtgacgccacaggagatgactgtacagcc 61
Query: 70 ttctagctttcc 81
| ||||||||||
Sbjct: 62 tcctagctttcc 73
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 caggctgaggtagtaggttgtatggtttcg 39
|||| |||||||||||||||| ||||||||
Sbjct: 2 cagggtgaggtagtaggttgtgtggtttcg 31
