miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 117 bits (59), Expect = 3e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 14 gtgaggtagttggttgtatggttttgcataataaacagcccggagttaactgtacaacct 73
|||||||||||||||||||||||| |||| |||||||||| |||| ||||||||||||||
Sbjct: 6 gtgaggtagttggttgtatggtttcgcatcataaacagcctggagataactgtacaacct 65
Query: 74 tctagctttccctgc 88
|||||||||||||||
Sbjct: 66 tctagctttccctgc 80
>RF00027;let-7;BAAE01140498.1/764-841 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 107 bits (54), Expect = 3e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 gcggtgtgaggtagttggttgtatggttttgcataataaacagcccggagttaactgtac 68
||||||||||||| ||||||||||||||| |||||||||| ||| |||| |||||||||
Sbjct: 1 gcggtgtgaggtaattggttgtatggtttcgcataataaatagcacggaaataactgtac 60
Query: 69 aaccttctagctttccct 86
||||||||||||||||||
Sbjct: 61 aaccttctagctttccct 78
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 44 ggagttaactgtacaaccttctagctttcc 73
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttcc 84
||||||||||||||||||||||||||||||
Sbjct: 44 ggagttaactgtacaaccttctagctttcc 73
>RF00027;let-7;AAUQ01090552.1/622-543 408171:epibiont metagenome
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 aactgtacaaccttctagctttccctg 87
|||||||||||||||||||||||||||
Sbjct: 52 aactgtacaaccttctagctttccctg 78
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttccctg 87
|||| |||||||||||||| |||||||||||||
Sbjct: 44 ggagataactgtacaacctcctagctttccctg 76
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 taactgtacaaccttctagctttccctg 87
|||||||||||||| |||||||||||||
Sbjct: 49 taactgtacaacctcctagctttccctg 76
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 55 ggagttaactgtacaaccttctagctttccc 85
||||||||||||||| ||| |||||||||||
Sbjct: 44 ggagttaactgtacagcctcctagctttccc 74
