miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04118326.1/6305-6226 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 123 bits (62), Expect = 4e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 11 tgaggtagttggttgtatggttttgcatcataatcagcctggagttaactgtacaacctt 70
||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct: 7 tgaggtagttggttgtatggtttcgcatcataaacagcctggagataactgtacaacctt 66
Query: 71 ctagctttccctgc 84
||||||||||||||
Sbjct: 67 ctagctttccctgc 80
>RF00027;let-7;BAAE01140498.1/764-841 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 11 tgaggtagttggttgtatggttttgcatcataatcagcctggagttaactgtacaacctt 70
||||||| ||||||||||||||| |||| |||| ||| ||| |||||||||||||||
Sbjct: 7 tgaggtaattggttgtatggtttcgcataataaatagcacggaaataactgtacaacctt 66
Query: 71 ctagctttccct 82
||||||||||||
Sbjct: 67 ctagctttccct 78
>RF00027;let-7;AAPN01238922.1/186-111 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 44 ggagttaactgtacaaccttctagctttcc 73
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttcc 80
||||||||||||||||||||||||||||||
Sbjct: 44 ggagttaactgtacaaccttctagctttcc 73
>RF00027;let-7;AAUQ01090552.1/622-543 408171:epibiont metagenome
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 aactgtacaaccttctagctttccctg 83
|||||||||||||||||||||||||||
Sbjct: 52 aactgtacaaccttctagctttccctg 78
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 49 ctggagttaactgtacaaccttctagctttccctg 83
|||||| |||||||||||||| |||||||||||||
Sbjct: 42 ctggagataactgtacaacctcctagctttccctg 76
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 taactgtacaaccttctagctttccctg 83
|||||||||||||| |||||||||||||
Sbjct: 49 taactgtacaacctcctagctttccctg 76
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 51 ggagttaactgtacaaccttctagctttccc 81
||||||||||||||| ||| |||||||||||
Sbjct: 44 ggagttaactgtacagcctcctagctttccc 74
>RF00027;let-7;AABS01000095.1/49271-49200 7719:Ciona intestinalis
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 ggctgaggtagttggttgtatggttt 33
||||||||||||||||||||| ||||
Sbjct: 4 ggctgaggtagttggttgtattgttt 29
