miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 9 tggggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataact 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataact 60
Query: 69 atacaatctactgtctttcctaa 91
|||||||||||||||||||||||
Sbjct: 61 atacaatctactgtctttcctaa 83
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 12 ggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataactata 71
||||||||||||||||||||||||||||| | | | ||| ||||||||||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggtt-taagtcctccctctgagataactata 62
Query: 72 caatctactgtctttcctaa 91
|| |||||||||||||||||
Sbjct: 63 cagtctactgtctttcctaa 82
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 9 tggggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataact 68
|||||||||||||||||||||||||||||||| | | |||| | ||||||||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggggttgtctaacctctttttgagataact 60
Query: 69 atacaatctactgtctttcc 88
||||||||||||||||||||
Sbjct: 61 atacaatctactgtctttcc 80
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 65.9 bits (33), Expect = 9e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 59 tgagataactatacaatctactgtctttcctaa 91
|||||||||||||||||||||||||||||||||
Sbjct: 50 tgagataactatacaatctactgtctttcctaa 82
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 65.9 bits (33), Expect = 9e-11
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 9 tggggctgaggtagtagattgaatagttgtggagccctgcgctctctctc-tgagataac 67
|||||||||||||||||||||||||||||||| | | || |||| || | || ||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggggttttccgacctctttcttcagttaac 60
Query: 68 tatacaatctactgtctttcc 88
|||||||||||||||||||||
Sbjct: 61 tatacaatctactgtctttcc 81
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 60 gagataactatacaatctactgtctttcctaa 91
||||||||||||||||||||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttcctaa 83
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 67/78 (85%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 12 ggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataactata 71
||||||||||||||||||||||||||||| | | || ||| || || | ||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggtc--acggcctccctgtgtgctaactata 61
Query: 72 caatctactgtctttcct 89
||||||||||||||||||
Sbjct: 62 caatctactgtctttcct 79
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 60 gagataactatacaatctactgtctttccta 90
|||||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttccta 80
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 61.9 bits (31), Expect = 1e-09
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 13 gctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataactatac 72
|||||||||||||||||||||||||||||| | ||| || ||||||||||||||
Sbjct: 5 gctgaggtagtagattgaatagttgtggag-tataaaacctccctttgagataactatac 63
Query: 73 aatctactgtctttc 87
|||||||||||||||
Sbjct: 64 aatctactgtctttc 78
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 56 ctctgagataactatacaatctactgtctttcct 89
||||||||||||||| ||||||||||||||||||
Sbjct: 46 ctctgagataactatgcaatctactgtctttcct 79
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 61 agataactatacaatctactgtctttcct 89
|||||||||||||||||||||||||||||
Sbjct: 51 agataactatacaatctactgtctttcct 79
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 62 gataactatacaatctactgtctttcct 89
||||||||||||||||||||||||||||
Sbjct: 50 gataactatacaatctactgtctttcct 77
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 gagataactatacaatctactgtctttc 87
||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttc 77
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 50 ctctctctctgagataactatacaatctactgtctttcc 88
|||| ||| ||||||||||||||| ||||||||||||||
Sbjct: 42 ctctgtctgtgagataactatacagtctactgtctttcc 80
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 tgagataactatacaatctactgtctttcct 89
||||||||||||||| |||||||||||||||
Sbjct: 50 tgagataactatacagtctactgtctttcct 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgaggtagtagattgaatagttgtgg 40
||||||||||||||||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtgg 32
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 taactatacaatctactgtctttcct 89
||||||||||||||||||||||||||
Sbjct: 51 taactatacaatctactgtctttcct 76
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 gagataactatacaatctactgtctttcc 88
|||||||||||||| ||||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttcc 78
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gagataactatacaatctactgtctttc 87
|||||||||||||| |||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttc 77
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 61 agataactatacaatctactgtctttcctaa 91
|||||||||||||| |||||||||||||||
Sbjct: 52 agataactatacaacttactgtctttcctaa 82
